Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1978 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCAATTTACGCTCTTAAGAATTACGAGTTTGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGTATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 47.01 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTVSFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31798588 31800397 - CePI673135_05g019780.1 Cec05g1978 203781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1978 445 MobiDBLite consensus disorder prediction 12 30 - -
Cec05g1978 445 ProSiteProfiles IQ motif profile. 90 118 - -
Cec05g1978 445 MobiDBLite consensus disorder prediction 1 31 - -
Cec05g1978 445 FunFam IQ-domain 11 89 140 - -
Cec05g1978 445 ProSiteProfiles IQ motif profile. 114 141 - -
Cec05g1978 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Cec05g1978 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Cec05g1978 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Cec05g1978 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Cec05g1978 445 MobiDBLite consensus disorder prediction 410 424 - -
Cec05g1978 445 MobiDBLite consensus disorder prediction 410 445 - -
Cec05g1978 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1978 Cec-Chr5:31798588 Cec09g2145 Cec-Chr9:38401423 2.30E-29 dispersed
Cec01g1537 Cec-Chr1:29958930 Cec05g1978 Cec-Chr5:31798588 1.60E-11 transposed
Cec03g1235 Cec-Chr3:27419827 Cec05g1978 Cec-Chr5:31798588 6.30E-41 transposed
Cec05g1978 Cec-Chr5:31798588 Cec09g0072 Cec-Chr9:606154 3.00E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1978 - - - 0.0