Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1978 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCAATTTACGCTCTTAAGAATTACGAGTTTGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGTATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 47.01 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTVSFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31798588 31800397 - CePI673135_05g019780.1 Cec05g1978 203781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1978 445 MobiDBLite consensus disorder prediction 12 30 - -
Cec05g1978 445 ProSiteProfiles IQ motif profile. 90 118 - -
Cec05g1978 445 MobiDBLite consensus disorder prediction 1 31 - -
Cec05g1978 445 FunFam IQ-domain 11 89 140 - -
Cec05g1978 445 ProSiteProfiles IQ motif profile. 114 141 - -
Cec05g1978 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Cec05g1978 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Cec05g1978 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Cec05g1978 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Cec05g1978 445 MobiDBLite consensus disorder prediction 410 424 - -
Cec05g1978 445 MobiDBLite consensus disorder prediction 410 445 - -
Cec05g1978 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1978 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1978 Cec-Chr5:31798588 Cec09g2145 Cec-Chr9:38401423 2.30E-29 dispersed
Cec01g1537 Cec-Chr1:29958930 Cec05g1978 Cec-Chr5:31798588 1.60E-11 transposed
Cec03g1235 Cec-Chr3:27419827 Cec05g1978 Cec-Chr5:31798588 6.30E-41 transposed
Cec05g1978 Cec-Chr5:31798588 Cec09g0072 Cec-Chr9:606154 3.00E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g2145 . 1 473 IQD Protein Family AT3G52290 54.7 6.1e-104 374.8
Cec05g2305 . 1779 1988 IQD Protein Family AT2G26410 50.2 2.8e-42 170.2
Cec03g1235 . 50 457 IQD Protein Family AT3G22190 57.8 1.4e-97 353.6
Cec05g1978 . 1 438 IQD Protein Family AT2G26180 62.0 1.8e-121 433.0
Cec04g2056 . 49 322 IQD Protein Family AT2G33990 52.1 7.2e-63 237.7
Cec07g1090 . 133 316 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cec04g2056 . 49 270 IQD Protein Family AT3G15050 50.5 5.4e-55 211.5
Cec07g1090 . 136 309 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cec01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 1.6e-75 280.4
Cec06g0277 . 1 508 IQD Protein Family AT4G00820 50.9 2.1e-114 409.8
Cec05g0021 . 1 455 IQD Protein Family AT4G00820 50.5 1.3e-103 374.0
Cec06g0277 . 1 508 IQD Protein Family AT1G01110 50.2 3.2e-110 396.0
Cec09g0022 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
Cec03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 6.6e-65 245.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39