Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1996 ATGTCTAAAAATGACCTCAACATGGTGATGGACACGTGTCCACCCTCCTCGATCCTCAAAACCCTCGCGAACCTCCATAAATCTTGTCCTTTCTTCCTACTTGAGCTCTTTATTTTACTTCCTTCGCCTCCATTTTCGCTCTTAACCTTCCACTCTGCTTTCTGGGTTTTCTCCTTTCCAATCAAGGAGATTTTCTGGATTTGGGTTTATGTTTGTTTGTTGCTGAAATCACCTGATTTCATTTTCTTCTCCCCTTCGCTGAATTGGGTTGTGACTTGTGAGAAGAAACCACATGATCGTATTGGATTTCGTGTTTTAGAACTGGCTAAGATGAGCCTGGATGCAGCAGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACTGCTCTTTATCCTGTTGTTCTTTTGAAAACTCGACTTCAGGTTTCAGCTACCAAGGTATCATGCTTTAAAATGTCATACTCTATCATGCGTCATGAAGGCTTGAGAGGGTTATACAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGCGTTGGAAGTGCAACAATTAAGCTAGGCTTTTCAGACACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCAGCCATGGCTGCACAATTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGATTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAGCGTTTCTAATCTTAATTCTTGCGTCTATAAAAATGGTATTGACGCTTTTAGAAAGATCATTTATGCTGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCAATATTGACATATGCGCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTTGCTCACAGACTCATTTGGAGTGGTCTAGGCTACTACACAAGTAAGAAGGATGAAGGTTGTATTAATGGTGGCTATGGCTTTAAATCAGATTCTAAGGCAACGGTGGCAGTTCAGGGGTTGAGTGCAGCCTTGGCCAGTGGAGTTTCTGCTATCATAACAATGCCTCTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGCGAAGAAAATGGCCAAAGACGCCCTCTAACAGCATTGCAGACCATAAGGAACTTGATTAAGGAAGGTGGACTGAATGCTTGTTACAGAGGGCTTGGTCCAAGGTGGGCTTCAATGGCCATGTCGGCGACCACCATGATCACAACCTATGAGTTTCTCAAACGACTGTCTACTAAGAACCAAGATTGTTTGAGCAGATGA 1383 42.66 MSKNDLNMVMDTCPPSSILKTLANLHKSCPFFLLELFILLPSPPFSLLTFHSAFWVFSFPIKEIFWIWVYVCLLLKSPDFIFFSPSLNWVVTCEKKPHDRIGFRVLELAKMSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPVVLLKTRLQVSATKVSCFKMSYSIMRHEGLRGLYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIKLGFSDTTAMAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYYTSKKDEGCINGGYGFKSDSKATVAVQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLIKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSTKNQDCLSR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31957681 31959328 + CePI673135_05g019960.1 Cec05g1996 203799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1996 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 136 218 IPR018108 -
Cec05g1996 460 Pfam Mitochondrial carrier protein 149 218 IPR018108 -
Cec05g1996 460 Pfam Mitochondrial carrier protein 360 453 IPR018108 -
Cec05g1996 460 Pfam Mitochondrial carrier protein 236 332 IPR018108 -
Cec05g1996 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 331 IPR018108 -
Cec05g1996 460 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085(InterPro)
Cec05g1996 460 PRINTS Mitochondrial carrier protein signature 150 168 IPR002067 GO:0055085(InterPro)
Cec05g1996 460 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085(InterPro)
Cec05g1996 460 SUPERFAMILY Mitochondrial carrier 133 447 IPR023395 -
Cec05g1996 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 360 450 IPR018108 -
Cec05g1996 460 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 116 456 - -
Cec05g1996 460 Gene3D Mitochondrial carrier domain 138 458 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1996 Cec-Chr5:31957681 Cec11g0505 Cec-Chr11:5353691 3.10E-69 dispersed
Cec05g1996 Cec-Chr5:31957681 Cec08g1770 Cec-Chr8:28800226 1.40E-13 wgd
Cec05g1996 Cec-Chr5:31957681 Cec09g0081 Cec-Chr9:712596 2.10E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1996 K15121 - csv:101213436 642.499