Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2004 ATGGGTTCAACACAATTTTCATTTCTATTATATCTTCTTACAATCCAAATTTCAGTATCAGGAGTATTTTCCACCACTTTCAGCATAGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTCCACCACTTCCCACCACAGGCTTCGTCCTTGCCGCCGGCGAGTCCAAAACAATCTCCGCTCCGGCATCTTGGGGTGGCCGATTCTGGGGCCGAACTCGCTGTTCAGAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGATTGCGGCTCCAACAAGGTCGAGTGCAGTGGAAACGGCGCGAAGCCACCGGCAACTCTGGCGGAGTTCACCCTTGACGGTGCTGGCGGGTTGGACTTCTTCGACGTGAGTTTGGTCGACGGTTACAATATCCCTATGCTGGTGGTCCCACAAGGTGGCACCGGCGAGAAATGCGTGAGCACGGGATGCGTTGTGGATTTGAACGGCGCGTGTCCTCAAGAACTCAAGGTTATGAGCGTTGACGGCGGAGATAACGTCGCGTGTAAAAGCGCGTGCGAAGCATTTAACCAACCGCAATTCTGTTGCAGTGGCGAGTACGCGACTCCCGATACTTGTAAACCTTCTGCGTACTCGCAGGTGTTCAAAAACGCTTGCCCACGCGCTTACAGCTACGCTTACGACGACACGACTAGCACGTTTACATGTGCCGACGCTGATTATATTATAACATTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACTACACAAACACGCCGGCGATCAACGGCGGAAACGGTACAATGGTTTACGAAGGGGCTGAGTATGATCTAAGCGGCGCGTCGAGAACAACGCTCCGACAATTTCTTGGGGTAGTCGTTGCCGCCGTGGCAATTCTTCAAATTCAGCAACTCGTTTGA 933 51.55 MGSTQFSFLLYLLTIQISVSGVFSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESKTISAPASWGGRFWGRTRCSEDSTGKFSCLTGDCGSNKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPQELKVMSVDGGDNVACKSACEAFNQPQFCCSGEYATPDTCKPSAYSQVFKNACPRAYSYAYDDTTSTFTCADADYIITFCPSPNTSQKSTDNHYTNTPAINGGNGTMVYEGAEYDLSGASRTTLRQFLGVVVAAVAILQIQQLV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32025568 32027128 - CePI673135_05g020040.1 Cec05g2004 203807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2004 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cec05g2004 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cec05g2004 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cec05g2004 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cec05g2004 310 PANTHER OS03G0233200 PROTEIN 9 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cec05g2004 310 SMART tha2 27 247 IPR001938 -
Cec05g2004 310 PIRSF PR5 1 279 IPR001938 -
Cec05g2004 310 CDD TLP-PA 26 246 - -
Cec05g2004 310 Gene3D Thaumatin 25 247 IPR037176 -
Cec05g2004 310 Pfam Thaumatin family 31 247 IPR001938 -
Cec05g2004 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cec05g2004 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Cec05g2004 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2004 Cec-Chr5:32025568 Cec08g1473 Cec-Chr8:26469886 3.50E-125 dispersed
Cec05g2697 Cec-Chr5:37530861 Cec05g2004 Cec-Chr5:32025568 2.90E-76 transposed
Cec04g1738 Cec-Chr4:36418097 Cec05g2004 Cec-Chr5:32025568 9.20E-78 wgd
Cec05g2004 Cec-Chr5:32025568 Cec08g1472 Cec-Chr8:26453904 5.40E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2004 - - - 0.0