Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2014 ATGTCGGTCGCCGTCGTTGGATCTTTCTCTCCACTAAGATCTCCGATGTGGAGGGACCGCCCTCGTTTCACCATGGCCGTCCGATCCAAACCGGTCTCTGTTTCCCCAATTTTTACTAAGTTTCAGAAAGATTGCGACACCCCTTTGCCGGTACTGCGCCACGTGGCCGATTCAATGGCCAATGATATGCGAGCTGGGCTTGCCGTCGACGGCGGCAGCGATCTCAAAATGATTCTTAGCTATGTCGACATTCTCCCTAGTGGGAATGAGAAAGGGTTATTTTATGCATTGGATCTCGGTGGCACTAATTTCCGAGTGCTTAGAGTTCAATTGGGTGGGAAAGAAGAACGTGTTATTTCCACTGAATTTGAACAAGTTTCAATCCCTCAACACCTAATGTTTGCCACATCCCAGGAGCTCTTTGATTTTATTGCTTCTGGTCTGGAAAAATTTTTAGAAAGTGAAGGTGACAAATTCCACCTTTGTCCTGGAAGAAAGAGAGAGATTGGATTCACATTCTCATTCCCTGTGAAACAAACTTCCATTGATTCTGGCATATTAATCAAATGGACTAAAGGTTTTGCTGTTTCTGGAATGGATGGGAAAGATGTTGTTGATTGTCTAAATGAAGCCATGGAAAGGCGAGGACTAGATATTCGTGTTTCGGCCCTTGTTAACGATGCGGTTGGAACCTTGGCTGGAGCAAGATACTACGACGACGATGTCGTGGCTGCTGTGATTTTAGGTACAGGAACCAATGCCTGTTATATAGAACAAAAGAATGCTATTCCTAAGTTGCAAGGCCCGGCATCTTCTTCAGGGAAAACACTTATCAGCACAGAGTGGGGAGCATATTCAAATGGTCTTCCTCTTAGTGTTTTTGATAGAGAGATGGATGCTGCCAGTATCAATCCAGGGGAGCAGATCTTTGAGAAGACAATAGCTGGAATGTACCTTGGTGAAATTGCTCGTAGAGTGCTTTTGGCAATGGCTGAATTCTCCCCTCTTTTTGGCAAATCCATTCCCGAAAAGTTGTTGAAGCATTTCACCCTCAGCACACCAGATCTATGTGCTATGCAGCAAGATGACTCCAACGACCTCCAAGCTGTCGGATCAATGTTGTACAACGTTTTCGGGGTCGAGTCGGATTTAAGTGCGAGAAAAATGGTCGTAGAGGTGTGTGACACGCTTTCCAAGCGAGGAGGGCGATTGGCAGGGGCGGGAATTGTAGGAGTTCTACACAAGATTGAAGATTTTGAAGATGTAAAGTTTGGAAAGAGGAGAGTTGTGGCCATGGATGGAGGATTGTATGAGAATTATCCACAATACAGAAGAACTTTCAAAACAGCAATTCGCTGGCAACTTTGTTCTCCGACTTCGGCCGCCGATATTCAATTTGAGCTGCTTTCGTCGATCTTCCTTCCTCATTTTCAAGAATGGTCTGTCGACTCTCTCATTGGAATGATCTTCCCGATCCGGTTCATACTTTTGCAAAACCGGCAGGGCAAGACCCGTCTCGCTAAGTATTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTTGAATACGAGGTTCATCGATTGGTGGTTAATAGAGATCCCAAGTTCACAAATTTTGTTGAGTTCCGAACACACAAGGTCATCTACCGACGATATGCAGGATTATTTTTCTCTCTTTGTGTGGACATAACAGACAATGAGTTGGCCTACCTCGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTTGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGA 1899 44.44 MSVAVVGSFSPLRSPMWRDRPRFTMAVRSKPVSVSPIFTKFQKDCDTPLPVLRHVADSMANDMRAGLAVDGGSDLKMILSYVDILPSGNEKGLFYALDLGGTNFRVLRVQLGGKEERVISTEFEQVSIPQHLMFATSQELFDFIASGLEKFLESEGDKFHLCPGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGMDGKDVVDCLNEAMERRGLDIRVSALVNDAVGTLAGARYYDDDVVAAVILGTGTNACYIEQKNAIPKLQGPASSSGKTLISTEWGAYSNGLPLSVFDREMDAASINPGEQIFEKTIAGMYLGEIARRVLLAMAEFSPLFGKSIPEKLLKHFTLSTPDLCAMQQDDSNDLQAVGSMLYNVFGVESDLSARKMVVEVCDTLSKRGGRLAGAGIVGVLHKIEDFEDVKFGKRRVVAMDGGLYENYPQYRRTFKTAIRWQLCSPTSAADIQFELLSSIFLPHFQEWSVDSLIGMIFPIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32081591 32087507 - CePI673135_05g020140.1 Cec05g2014 203817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2014 632 Pfam Hexokinase 244 467 IPR022673 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0016773(InterPro)
Cec05g2014 632 Gene3D - 58 468 - -
Cec05g2014 632 SUPERFAMILY Actin-like ATPase domain 241 456 IPR043129 -
Cec05g2014 632 Pfam Clathrin adaptor complex small chain 492 631 IPR022775 -
Cec05g2014 632 FunFam Phosphotransferase 80 248 - -
Cec05g2014 632 FunFam AP complex subunit sigma 491 632 - -
Cec05g2014 632 ProSitePatterns Hexokinase domain signature. 169 194 IPR019807 GO:0005524(InterPro)|GO:0006096(InterPro)
Cec05g2014 632 CDD AP2_sigma 492 631 IPR027156 GO:0016192(InterPro)|GO:0030122(InterPro)|GO:0035615(InterPro)|GO:0072583(InterPro)
Cec05g2014 632 PRINTS Hexokinase family signature 95 111 - -
Cec05g2014 632 PRINTS Hexokinase family signature 390 412 - -
Cec05g2014 632 PRINTS Hexokinase family signature 308 330 - -
Cec05g2014 632 PRINTS Hexokinase family signature 169 194 - -
Cec05g2014 632 PRINTS Hexokinase family signature 221 237 - -
Cec05g2014 632 PRINTS Hexokinase family signature 244 258 - -
Cec05g2014 632 Pfam Hexokinase 39 237 IPR022672 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0016773(InterPro)
Cec05g2014 632 CDD NBD_sugar-kinase_HSP70_actin 96 258 - -
Cec05g2014 632 Gene3D - 492 632 - -
Cec05g2014 632 ProSiteProfiles Hexokinase domain profile. 32 493 IPR001312 GO:0001678(InterPro)|GO:0004396(InterPro)|GO:0005524(InterPro)|GO:0005536(InterPro)|GO:0005975(InterPro)
Cec05g2014 632 SUPERFAMILY Actin-like ATPase domain 26 239 IPR043129 -
Cec05g2014 632 SUPERFAMILY SNARE-like 492 625 IPR011012 -
Cec05g2014 632 PANTHER HEXOKINASE 36 468 IPR001312 GO:0001678(PANTHER)|GO:0001678(InterPro)|GO:0004340(PANTHER)|GO:0004396(InterPro)|GO:0005524(InterPro)|GO:0005536(InterPro)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0005975(InterPro)|GO:0006006(PANTHER)|GO:0006096(PANTHER)|GO:0008865(PANTHER)|GO:0046835(PANTHER)|GO:0051156(PANTHER)
Cec05g2014 632 Gene3D - 80 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2014 K00844 - - csv:101216058 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0326 Cec-Chr2:3002861 Cec05g2014 Cec-Chr5:32081591 6.70E-40 dispersed
Cec04g1497 Cec-Chr4:34487803 Cec05g2014 Cec-Chr5:32081591 6.00E-95 dispersed
Cec05g2014 Cec-Chr5:32081591 Cec11g0219 Cec-Chr11:2364765 7.80E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29