Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2017 ATGGCACTCCTAACTAATTCCTCTACTGACCACAAGAAACCCCTCCGTAATAAACGCCGGAAAAAACACCCAACCCTAACACCGCCACCCTCCTCCGCCCAATCCTCATGGGACCATTTCAAGAATCTCATCACCTGCAAACAGGTTGAGGTTTCGAGATCAGTTCAGGAGCCGACGAAACGGTCACCGGCCTACTCCAAATTGGGCTCTTCTTGCAGTTCAATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCATAGAGCCGACAACTCACCGGAAAGCAGCTCCGTCGGACAAGAAACCAGGTTGCTTACTAGAAAACCTGCTAACGGCTCTTCCTCTCGTTCTTTAACCGCGCCGCCACCGCCATCCAGAACTAAAACCGCTGCTTCGGCTTCTGCTTCCTACAATTCCTCGTCTTCTAGAGGATTACAATTACGAAAGCTTTCTGGGTGTTACGAATGCCACACCATCGTTGACCCTAGCAGGTACCCAATTCCAAGGAGTTCTCTATGTCCTTGTCCTCAATGTGGAGAGGTCTTCCCGAAGGCTGAAAGCTTAGAGCTTCACCAATTAGTTCGACACGCTGTTTCGGAATTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAATCAAGCTGGCTGAAAAAGGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAGGATTGCCGTGACGCAGTGAAGACACGTGCGCTCGGAAGCACCAGAAAAAACCCGCGATGTGCGGCTGACGGAAATGAGCTGTTGCGGTTCCATTGTAGCGCCTTGTGGTGTGACCTCGGCTCACGTGGCTCAACCGGCTTGTGCGGCTCGATTCCCGGCTGCGGTGTCTGCAGTGTAATTCGTCATGGATTCCAGTGTAAGCCCGGTGGGCCCCTTGGTGTACGGACCACCGCTAGTAGTGGTAGGGCCCACGATTCGTTTGAATGCGGCGACGGAAGGCGACGCGCGATGTTGGTCTGCCGTGTAATCGCCGGGAGAGTGAAGCGGATCTCGGAGGAGGCTGCGACGGCGACAGCGACGGAGGAGGAGAATCTGTCGTCGGCGGCAGGCTCATACGACTCCGTTTCACGACACGCCGGGATGTACTCCAATCTCGAGGAGTTGATCATTTTCAATCCAAACGCTATCCTTCCTTGTTTCGTTGTCATCTACGAAGCGCTCCAAACCTAA 1257 52.51 MALLTNSSTDHKKPLRNKRRKKHPTLTPPPSSAQSSWDHFKNLITCKQVEVSRSVQEPTKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKPANGSSSRSLTAPPPPSRTKTAASASASYNSSSSRGLQLRKLSGCYECHTIVDPSRYPIPRSSLCPCPQCGEVFPKAESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALWCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGPLGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRISEEAATATATEEENLSSAAGSYDSVSRHAGMYSNLEELIIFNPNAILPCFVVIYEALQT 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32110642 32112932 - CePI673135_05g020170.1 Cec05g2017 203820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2017 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 204 IPR013087 -
Cec05g2017 418 MobiDBLite consensus disorder prediction 89 141 - -
Cec05g2017 418 MobiDBLite consensus disorder prediction 92 141 - -
Cec05g2017 418 ProSitePatterns Zinc finger C2H2 type domain signature. 176 199 IPR013087 -
Cec05g2017 418 MobiDBLite consensus disorder prediction 51 71 - -
Cec05g2017 418 SUPERFAMILY ADP-ribosylation 201 414 - -
Cec05g2017 418 Gene3D - 200 415 - -
Cec05g2017 418 MobiDBLite consensus disorder prediction 1 39 - -
Cec05g2017 418 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2067 Cec-Chr2:38388661 Cec05g2017 Cec-Chr5:32110642 4.20E-53 dispersed
Cec03g0936 Cec-Chr3:12645027 Cec05g2017 Cec-Chr5:32110642 1.10E-84 dispersed
Cec03g0939 Cec-Chr3:12747448 Cec05g2017 Cec-Chr5:32110642 6.60E-28 dispersed
Cec05g2017 Cec-Chr5:32110642 Cec10g0598 Cec-Chr10:7905361 2.10E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29621 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2017 - - - 0.0