Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2034 ATGGGCTCTGTGGAAGAGAAGCTCAAGACATCAGGGGGGTTGATTAATAACGGCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGTTATGGCACGCTTGCGCAGGTCCGCTTGTTTCCTTGCCCCATGTGGGTAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTACGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCTTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAATGAGTTTTTCTGCAAAACTTTAACTGCCAGTGACACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCGCCAACTCAGGAGCTCGTTGTTAGAGACTTGCATGACAATACCTGGACTTTTCGCCACATATACCGCGGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGTTGCTTATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCAGTTCTATCTGCCGATAGTATGCATATTGGGGTTCTTGCAGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCATTTACAATCTTCTACAACCCCAGGGCATGCCCTTCAGAATTTGTTATTCCTTTAGTCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATGTATGGGAACAATTGTTGGAATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGAGAAATCTTCAGGTTGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCAGGTCTTAAACGTCCATTACACGGTGGATTTTTGGGAGAAACTGACTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGTGGGGATCTTTCATATGCGCCAACTTTATGCTCTGAACCACTGATGAAGATGCTACTGAGGCCTCAAATGGTTAACCTTCAGGGAACCACCTTACAGCAGGATTCAGTTAACAATTTAGTTAAGATACAGGACATGAAGGACATGCAGCCAGTGACCAAAATGCAGCAGCTTATACCATCAGAAACTGCATCTCCCGGGAATCAAAATCATCATCATCATCCAGCACCTACACAATCTGATGTCATAAACCCAGATTCATCACCAAAAGAAAATCTACCCGGAAAAGTACACACTTCGGCGGCCATTGAAAGTGAAGCTCCAACTGCAGCTGATGTAGACAAGGCGAAATATGAACGTGATCTTTCAACCAATCAGTCCAATCCATTGCCCTCAGTTGGAGATTGTGGGGAGGAAAAACTCACTGGTAACGAAGTGAATATGCAAACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATTCCCATGCAGTTTCAATCCGTATCATGGCCCATGCAGCCGCAGCTTGAGTCACTAATCCAACACCCACAACCAACTGACATGCCTCAGCCTGAATTTACGAGTTCAAATGGTTTGATTTCATCCTTGGACGGCGATGGATGTTTGATCAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCAGGGAATCTTTCCATGTTGGGACTGCAAGACTCTTCAACAGTCTTTCCTGAGGCTCTTAATTTTCCCTTACCCTCAACAGGCCAAGACATGTGGGATCCTCTTAACAATATAAGGTTCTCATCCCAAACCAATCATCTCGTCTCATTCTCTCATCCAGACGTATCTAACCTCAACTGTATGGCTAATGCAAATATTATGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAGTACTTTGGTTGATCATGCCGTTTCAAGTACTATTCTTGATGATTATTGCACATTGAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCTAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCATGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCAGAATGGCTCATGGAAGCAAGTGGTACCGCCCTTGAGAACTTACACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACTAGTTTTAAGAACTACGACGAACTGTGCTCTGCTATCGAATGTATGTTTGGACTTGAGGGGTTGCTTAATGACCCAAGAGGGTCGGGATGGAAACTGGTTTATGTGGATTATGAGAATGATGTCCTGCTTATTGGTGATGATCCGTGGGAGGAATTTGTTAGCTGTGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTCCTATGATGCAAGATCCTGGCCTCAAATTTATCTGGGTATGCGAGATTCACGATGGAGCCATATCTTTGTTGCCTGTCTTTCATTTGCATATTTCCATTGTCTAG 2901 44.88 MGSVEEKLKTSGGLINNGPQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLVKYRKCVYGTQLSAGMRFGMMFETEESGKRRCMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQMVNLQGTTLQQDSVNNLVKIQDMKDMQPVTKMQQLIPSETASPGNQNHHHHPAPTQSDVINPDSSPKENLPGKVHTSAAIESEAPTAADVDKAKYERDLSTNQSNPLPSVGDCGEEKLTGNEVNMQTLVNQLSFVNQNQIPMQFQSVSWPMQPQLESLIQHPQPTDMPQPEFTSSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSTVFPEALNFPLPSTGQDMWDPLNNIRFSSQTNHLVSFSHPDVSNLNCMANANIMRDVSDESNNQSGIYSCSNLEISNGGSTLVDHAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSPMMQDPGLKFIWVCEIHDGAISLLPVFHLHISIV 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32279183 32283977 + CePI673135_05g020340.1 Cec05g2034 203837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2034 966 SUPERFAMILY CAD & PB1 domains 836 913 - -
Cec05g2034 966 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Cec05g2034 966 Gene3D - 313 385 - -
Cec05g2034 966 MobiDBLite consensus disorder prediction 484 538 - -
Cec05g2034 966 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec05g2034 966 FunFam Auxin response factor 830 923 - -
Cec05g2034 966 FunFam Auxin response factor 147 251 - -
Cec05g2034 966 FunFam Auxin response factor 313 385 - -
Cec05g2034 966 Pfam AUX/IAA family 835 922 IPR033389 -
Cec05g2034 966 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cec05g2034 966 ProSiteProfiles PB1 domain profile. 834 918 IPR053793 -
Cec05g2034 966 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 926 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec05g2034 966 MobiDBLite consensus disorder prediction 484 510 - -
Cec05g2034 966 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
Cec05g2034 966 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Cec05g2034 966 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
Cec05g2034 966 Gene3D - 831 923 - -
Cec05g2034 966 Gene3D - 147 250 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2197 Cec-Chr4:39695644 Cec05g2034 Cec-Chr5:32279183 3.70E-170 dispersed
Cec05g2034 Cec-Chr5:32279183 Cec11g0145 Cec-Chr11:1706992 4.80E-173 dispersed
Cec05g2034 Cec-Chr5:32279183 Cec03g0767 Cec-Chr3:8512698 3.70E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29622 PF02309 AUX_IAA 1.10E-09 CL0072 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2034 K14486 - csv:101216825 1813.51