Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2043 ATGGGGAAGAAGAAGTTCTTCGACAAGAAAAAATCTGCAACTTTCCAATTACTCTCTCGTGACTCATCTGATCCCAATTACGATGGAACTGCCGCCACCGACCGTGTTTTTGTTCGTGTGGACAACCATTCTTATACTCTCCCTGCCTTCGATGATTGCCCTGCCGATGATGAAGATCCCAACTCAATATTTGCTGATGCTCCTGAAGATTATGATGATGAAGAGAATGGAGGTTTAGGGCCGTCTGTGCGCTCTCGTGGGGAAGTTGGTGGAACAGCGCCGTTACCCGAAAATGTTAGAAGGGAGATTTTGGAGCTGGGTTTCCCTGATGATGGTTACAATTATTTGCTGCACCTTCGGGAGATTAAGAATACTGGTGGTGGTTCGGCGTTTTATCAGAACCCCAAGGCCAAGCTGAATCAGGTTCCACGCGATGAGAAGGCGTATGATGCCTCCAGAGTGATTGTTTCTAAAGGGAACCGTGAAGCCGATGAGAACATCTACAAAGTTGCGTCCAAGACTGTTGGAGTCAGGGTTCAAAATGCTGTTGACCCTGAAATAGCTGCACTGCTTGATGACGATGATTTATCGCGATTCGGTTCTGATGTTGAGGACTTAGAAGAGGACTTTGTAGTTCAGGCAAACTTATGTGAAGAAGGAGAGGATGATACAACGAGCACTACGTTTAATGTGGTTGAGGATGTTGAGAGAATGGCAGGAAGCCATTTAGTTAACAACAAATCTTCTGGTTACGACATTTTTGAGGACACAGATGTGGATCATTTGGAAGAAGCAAGCAGCAATAGTGATGTTGATAAGCCAAGAACTCGTCGACTTTTGGATGATCAATTTGACACTCTGTTGAGCCGGGACTATGCATCTAGTGACAATGATGGCATTGATTATGACGAACCCTGTATAGCTGAAGAAGACAAATCCCTTGCCCAAAAGCTGAATCATGCCCTTGGCAATCATAGTAAGGATGAGTTGGAACTTGAGCAAGGATATAGAGCTCCTGCAGATATATTGAGTGTCAAAAAAGGATTAGAAGATAAAGAGCTTTTGCAGTCTGCCAGTGATGTAATTCACCGGTGTATGGAATACGCAGAGAAATATCAAAATGAAGATGATGACATAGAAGATGAATTTATATTTGAGGAGAGTAGTGATGAATCTGAAGTTTGGGACTGTGAGACTATTGTCTCTACATGTTCTAATCTCAATAACCATCCTGGGAAGATCGTAGCTCCTGAAATGACCCGAAGGAAGTTGGCTGAAACTGTCTCTGGTGCTCTTAATTCCAATAATCCTGTGATAACTCTTAGGGGGAAAGAGAAGCTACCAGTGGACTTTCTACCTCATGGTCGAAAAGTTGTTGACAAAGTGAAAGATATTGGCGACTCGAGAACTGAACATCAGAAGAGGAAGTCGCATGCTCAGGAGTCCAAGGAAGAGAAGAAGGAGAGAAAGGCTGCTATCAAAGAAGCACGTCGTGAAGCACGCCGCACGAAGAAAGAAATGAAGGGCCTTTACAAGGGGGAAGCTCATCGTGCTCAGAAAGTAGTTGCTTTTTCTGGTCCAGCATCTATTCATCTTATGTGA 1602 44.01 MGKKKFFDKKKSATFQLLSRDSSDPNYDGTAATDRVFVRVDNHSYTLPAFDDCPADDEDPNSIFADAPEDYDDEENGGLGPSVRSRGEVGGTAPLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSAFYQNPKAKLNQVPRDEKAYDASRVIVSKGNREADENIYKVASKTVGVRVQNAVDPEIAALLDDDDLSRFGSDVEDLEEDFVVQANLCEEGEDDTTSTTFNVVEDVERMAGSHLVNNKSSGYDIFEDTDVDHLEEASSNSDVDKPRTRRLLDDQFDTLLSRDYASSDNDGIDYDEPCIAEEDKSLAQKLNHALGNHSKDELELEQGYRAPADILSVKKGLEDKELLQSASDVIHRCMEYAEKYQNEDDDIEDEFIFEESSDESEVWDCETIVSTCSNLNNHPGKIVAPEMTRRKLAETVSGALNSNNPVITLRGKEKLPVDFLPHGRKVVDKVKDIGDSRTEHQKRKSHAQESKEEKKERKAAIKEARREARRTKKEMKGLYKGEAHRAQKVVAFSGPASIHLM 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32344018 32347278 - CePI673135_05g020430.1 Cec05g2043 203846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2043 533 MobiDBLite consensus disorder prediction 464 512 - -
Cec05g2043 533 Coils Coil 469 513 - -
Cec05g2043 533 MobiDBLite consensus disorder prediction 52 76 - -
Cec05g2043 533 PANTHER LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED 1 533 IPR007307 GO:0000056(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0030688(PANTHER)|GO:0042274(InterPro)|GO:0042274(PANTHER)
Cec05g2043 533 MobiDBLite consensus disorder prediction 48 94 - -
Cec05g2043 533 Pfam Low temperature viability protein 8 258 IPR007307 GO:0042274(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2043 K14798 - - csv:101207600 857.055
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1044 . Blo12g00897 . . . Bpe04g00230 Bma04g00226 . . . Cma01g01947 . Car01g01521 . . . . . . . . . . . . . . . . . . . . Cone17ag1380 Cone20ag0103 Lsi04g01717 . . . . . . . . . . . . . . . . . . . Cpe02g00092 . . . . . . . Cla05g01899 Cam05g2035 Cec05g2043 Cco05g2099 Clacu05g2027 Cmu05g1907 Cre05g2029 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004778 0 1 1 1 1 1 1 1 1 1 1 1 1 4 2 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35