Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2044 | ATGGTGGAATTGCGAGGAGGGAAAGTGGTGGTCCCCAGTGAGGCAGAAAATAAAAGGGAGAGTTATGGGATGGAAAAGCAGAAGAAAGACATTACGAGGTTTATTGTAAAACCTGCAATGCCTTTCACTAAATTAGCCCCAAACTTTCCTTTTACGGCAATTTCCTCTTCCTCTCTAATTCATTTCCCCTTTTCTTGCTTCAAACTTCAATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATTTCCCTTCTCCCTTCCCTTCACACCAACAACAACAACAACAACAACAAAATAATGGCTCGTGGGAAGATCCAGATCAAGAGAATCGAAAACCCCACAAACAGGCAAGTCACTTACTCCAAACGACGCAACGGCCTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATCATGTTCTCTAGCACTGGAAAACTCCACGAGTATATCAGCCCTGCTACTTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGATCTCTCACTATGAGAGAATGCAAGACAATCTGAAGAAGCTTAAAGATGTGAATCGAAATCTCCGCAAGCAGATTAGGCAGAGGATGGGGGAATGTTTGAATGATCTGAGTTTTGAAGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATTAAACCAGATTGAAACGCACAAGAAGAAGTTAAAGAGCGTGGGACAAATACACAAGAGTCTTCTCCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGAGTTGGAATAGGAGATTATGAGTCAATTATGGGATTCCCAGGCGGTGGACATCCTCGCATATTTGCATTGCGCCTCCAGCCCAACCACGGCCATAGCCATACCCACACCCACACCCACACCCACAACCATCCTAATATTCATGTTCATCCACCTTCAGATCTCACTACCTATCCACTACTCGAGTAG | 1041 | 45.44 | MVELRGGKVVVPSEAENKRESYGMEKQKKDITRFIVKPAMPFTKLAPNFPFTAISSSSLIHFPFSCFKLQSSSSSSSSSSISLLPSLHTNNNNNNNKIMARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQDNLKKLKDVNRNLRKQIRQRMGECLNDLSFEELRCLEQDMDNAVRIIRERKYRVILNQIETHKKKLKSVGQIHKSLLQEFDIATEEDPHYGLVDNGGVGVGIGDYESIMGFPGGGHPRIFALRLQPNHGHSHTHTHTHTHNHPNIHVHPPSDLTTYPLLE | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32349924 | 32354172 | - | CePI673135_05g020440.1 | Cec05g2044 | 203847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2044 | 346 | Coils | Coil | 182 | 209 | - | - | |
Cec05g2044 | 346 | Gene3D | - | 111 | 176 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec05g2044 | 346 | CDD | MADS_MEF2_like | 100 | 178 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cec05g2044 | 346 | SUPERFAMILY | SRF-like | 101 | 193 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec05g2044 | 346 | FunFam | MADS-box transcription factor 16 | 111 | 195 | - | - | |
Cec05g2044 | 346 | ProSiteProfiles | K-box domain profile. | 182 | 272 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec05g2044 | 346 | ProSitePatterns | MADS-box domain signature. | 101 | 155 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec05g2044 | 346 | MobiDBLite | consensus disorder prediction | 315 | 329 | - | - | |
Cec05g2044 | 346 | Pfam | K-box region | 180 | 266 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec05g2044 | 346 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 108 | 155 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec05g2044 | 346 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 99 | 297 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec05g2044 | 346 | PRINTS | MADS domain signature | 121 | 136 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec05g2044 | 346 | PRINTS | MADS domain signature | 101 | 121 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec05g2044 | 346 | PRINTS | MADS domain signature | 136 | 157 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec05g2044 | 346 | SMART | madsneu2 | 99 | 158 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec05g2044 | 346 | MobiDBLite | consensus disorder prediction | 313 | 346 | - | - | |
Cec05g2044 | 346 | ProSiteProfiles | MADS-box domain profile. | 99 | 159 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g2044 | Cec-Chr5:32349924 | Cec11g1650 | Cec-Chr11:30825720 | 9.20E-34 | dispersed | |
Cec05g2044 | Cec-Chr5:32349924 | Cec06g0024 | Cec-Chr6:275717 | 2.00E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29623 | PF01486 | K-box | 9.70E-22 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2044 | K09264 | - | csv:101218008 | 417.927 |