Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2044 ATGGTGGAATTGCGAGGAGGGAAAGTGGTGGTCCCCAGTGAGGCAGAAAATAAAAGGGAGAGTTATGGGATGGAAAAGCAGAAGAAAGACATTACGAGGTTTATTGTAAAACCTGCAATGCCTTTCACTAAATTAGCCCCAAACTTTCCTTTTACGGCAATTTCCTCTTCCTCTCTAATTCATTTCCCCTTTTCTTGCTTCAAACTTCAATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATTTCCCTTCTCCCTTCCCTTCACACCAACAACAACAACAACAACAACAAAATAATGGCTCGTGGGAAGATCCAGATCAAGAGAATCGAAAACCCCACAAACAGGCAAGTCACTTACTCCAAACGACGCAACGGCCTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATCATGTTCTCTAGCACTGGAAAACTCCACGAGTATATCAGCCCTGCTACTTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGATCTCTCACTATGAGAGAATGCAAGACAATCTGAAGAAGCTTAAAGATGTGAATCGAAATCTCCGCAAGCAGATTAGGCAGAGGATGGGGGAATGTTTGAATGATCTGAGTTTTGAAGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATTAAACCAGATTGAAACGCACAAGAAGAAGTTAAAGAGCGTGGGACAAATACACAAGAGTCTTCTCCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGAGTTGGAATAGGAGATTATGAGTCAATTATGGGATTCCCAGGCGGTGGACATCCTCGCATATTTGCATTGCGCCTCCAGCCCAACCACGGCCATAGCCATACCCACACCCACACCCACACCCACAACCATCCTAATATTCATGTTCATCCACCTTCAGATCTCACTACCTATCCACTACTCGAGTAG 1041 45.44 MVELRGGKVVVPSEAENKRESYGMEKQKKDITRFIVKPAMPFTKLAPNFPFTAISSSSLIHFPFSCFKLQSSSSSSSSSSISLLPSLHTNNNNNNNKIMARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQDNLKKLKDVNRNLRKQIRQRMGECLNDLSFEELRCLEQDMDNAVRIIRERKYRVILNQIETHKKKLKSVGQIHKSLLQEFDIATEEDPHYGLVDNGGVGVGIGDYESIMGFPGGGHPRIFALRLQPNHGHSHTHTHTHTHNHPNIHVHPPSDLTTYPLLE 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32349924 32354172 - CePI673135_05g020440.1 Cec05g2044 203847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2044 346 Coils Coil 182 209 - -
Cec05g2044 346 Gene3D - 111 176 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2044 346 CDD MADS_MEF2_like 100 178 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec05g2044 346 SUPERFAMILY SRF-like 101 193 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2044 346 FunFam MADS-box transcription factor 16 111 195 - -
Cec05g2044 346 ProSiteProfiles K-box domain profile. 182 272 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec05g2044 346 ProSitePatterns MADS-box domain signature. 101 155 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2044 346 MobiDBLite consensus disorder prediction 315 329 - -
Cec05g2044 346 Pfam K-box region 180 266 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec05g2044 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 108 155 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2044 346 PANTHER SERUM RESPONSE FACTOR HOMOLOG 99 297 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec05g2044 346 PRINTS MADS domain signature 121 136 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2044 346 PRINTS MADS domain signature 101 121 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2044 346 PRINTS MADS domain signature 136 157 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2044 346 SMART madsneu2 99 158 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2044 346 MobiDBLite consensus disorder prediction 313 346 - -
Cec05g2044 346 ProSiteProfiles MADS-box domain profile. 99 159 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2044 Cec-Chr5:32349924 Cec11g1650 Cec-Chr11:30825720 9.20E-34 dispersed
Cec05g2044 Cec-Chr5:32349924 Cec06g0024 Cec-Chr6:275717 2.00E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29623 PF01486 K-box 9.70E-22 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2044 K09264 - csv:101218008 417.927