Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2048 ATGGATAAAAAGGCCAGAAACACCACCAACGTTGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCTGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCCGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTCGGAACGCGCTGCCCAATCTCCCTCAATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTGTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTATTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA 543 54.14 MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQSERAAQSPSIIDSSPTATSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVGNWDTLQWCM 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32402836 32403378 - CePI673135_05g020480.1 Cec05g2048 203851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2048 180 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2048 180 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2048 180 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2048 180 MobiDBLite consensus disorder prediction 89 131 - -
Cec05g2048 180 MobiDBLite consensus disorder prediction 106 131 - -
Cec05g2048 180 MobiDBLite consensus disorder prediction 1 33 - -
Cec05g2048 180 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Cec05g2048 180 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2048 180 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
Cec05g2048 180 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2048 180 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2048 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 127 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cec05g2048 180 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0801 Cec-Chr4:27680416 Cec05g2048 Cec-Chr5:32402836 1.60E-28 dispersed
Cec05g2048 Cec-Chr5:32402836 Cec10g1732 Cec-Chr10:31980028 3.70E-26 dispersed
Cec05g2048 Cec-Chr5:32402836 Cec08g1512 Cec-Chr8:26852543 2.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29625 PF00847 AP2 3.00E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2048 - - - 0.0