Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2076 ATGCAACATTCACGTGAGGCCGGGCCATGGCTCTATGAGTCTATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAAAGACCACCACAACCAAGTGTGGACCTCACCACAATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAAAGGAACACGGATATTTCGGAGTGAGCGACTACAGAGAAGAATCGTCCATGAGTTCAACGGACGAGAACCGAGAAACGGGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGTGACGACGGAGGAAACGACCTACTGTTGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTGCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGTACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCCGCTGTAGCTTACGAGCTCAATGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTACTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACGTTGATTTCCAAAGGAAAGAAGCCGATAACTGGGTCCCCCGAGCCTCAGGAACCTATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1551 48.1 MQHSREAGPWLYESMQLQRTCIRLPTERPPQPSVDLTTINQQKGSTSASHIKEHGYFGVSDYREESSMSSTDENRETGGGGGDGDGETAAADNGDDGGNDLLLKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSARVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPTAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32637920 32641285 + CePI673135_05g020760.1 Cec05g2076 203879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2076 516 Gene3D - 160 214 - -
Cec05g2076 516 ProSitePatterns Tub family signature 2. 501 516 IPR018066 -
Cec05g2076 516 PRINTS Tubby superfamily signature 444 460 IPR000007 -
Cec05g2076 516 PRINTS Tubby superfamily signature 282 298 IPR000007 -
Cec05g2076 516 PRINTS Tubby superfamily signature 494 516 IPR000007 -
Cec05g2076 516 PRINTS Tubby superfamily signature 298 322 IPR000007 -
Cec05g2076 516 PRINTS Tubby superfamily signature 346 373 IPR000007 -
Cec05g2076 516 PRINTS Tubby superfamily signature 426 443 IPR000007 -
Cec05g2076 516 PRINTS Tubby superfamily signature 473 492 IPR000007 -
Cec05g2076 516 CDD F-box_AtTLP-like 166 210 - -
Cec05g2076 516 SUPERFAMILY F-box domain 154 209 IPR036047 GO:0005515(InterPro)
Cec05g2076 516 MobiDBLite consensus disorder prediction 56 71 - -
Cec05g2076 516 MobiDBLite consensus disorder prediction 124 157 - -
Cec05g2076 516 Pfam Tub family 227 511 IPR000007 -
Cec05g2076 516 MobiDBLite consensus disorder prediction 124 142 - -
Cec05g2076 516 MobiDBLite consensus disorder prediction 25 95 - -
Cec05g2076 516 Pfam F-box-like 166 208 IPR001810 GO:0005515(InterPro)
Cec05g2076 516 ProSitePatterns Tub family signature 1. 444 457 IPR018066 -
Cec05g2076 516 PANTHER TUBBY-RELATED 79 515 - -
Cec05g2076 516 Gene3D Tubby Protein; Chain A 224 516 IPR025659 -
Cec05g2076 516 MobiDBLite consensus disorder prediction 31 49 - -
Cec05g2076 516 SUPERFAMILY Tubby C-terminal domain-like 215 516 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2076 Cec-Chr5:32637920 Cec08g0347 Cec-Chr8:8778268 2.90E-116 dispersed
Cec05g1168 Cec-Chr5:10603970 Cec05g2076 Cec-Chr5:32637920 2.60E-118 transposed
Cec08g0729 Cec-Chr8:19023887 Cec05g2076 Cec-Chr5:32637920 8.90E-119 transposed
Cec09g0343 Cec-Chr9:2887042 Cec05g2076 Cec-Chr5:32637920 4.00E-12 transposed
Cec04g1658 Cec-Chr4:35803965 Cec05g2076 Cec-Chr5:32637920 2.40E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29627 PF01167 Tub 2.20E-105 CL0395 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2076 K19600 - csv:101222500 748.043