Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2102 ATGAGGTTGATTACAAGAGCATTTCAAGAGTGCGACACGTGGCGTGTCCTTGACCGTTGGTTCATTCCAATTTTTGCTTTCCGAGCGTGCACCGGCGGTGGCGATAGCAAGAAGAATATCCAGCACTTGTTCCACAATGTATGGCGAAACAGAGAAATAGCGGTGACGACCACTGACACTGACCTAAAAGAATCTGGCTTAAGGCCAGGAAGAAGCGTGGAAGACGAGCTTGATTCCAATTCTGCACTATTGACTTGTTTAAACCCTAATTATTTGGAATCTGCTGGCGATTTTTTGTGGTATTTCCTTGCTGCTGCTTTCGAAGTCTTCTGTCGGCAAATTACCGACGTTTTTGCTAGTGAAGACTCCGGCTCCATCTTCCAGCAACTTCGTGATTGCACAGCTCTAATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGAGAACAATCCAGAGCAGATCACATCGAAGGTCAATGAGCTAAAGGCTAAGTTAGGATCCTTAGTTGGACGCAATGCAATATATTGCAGTGATGCATGCTTGAAAAGATATCTAGTGGCCAGGAATTGGAATGTAGACAAAGCAAAGAAAATGCTGGAAGAGACATTCAAATGGAGATCTATGTATAAGCCTGAGGAAATTCGTTGGCCCGAAATAGCACTTGAAAGTGAGACTGGAAAACTTTATCGAGCAAGTTTTCACGACCGAGAAGGAAGAAGTGTTCTTATAATGAAGCCAGGAAAGCAGAACACGGCATCGATAGAAAATCAGATCCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCTGAAGGTCAGGAGCAGATGTCATGGCTAATTGATTTTAATGGTTGGTCTCTTAGCACCAGCGTCCCAATCAAATCTGCACGGGAGACCGTCAACATCTTGCAGAACCACTACCCCGAGAGACTAGCCCTTGCGTTTCTATATAATCCCCCAAGGATATTTGAAACATTCTGGAAGGTAGTCAAGTACCTTTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTTTATCCTAAGAAGCAAGAGAGTGTGGAACTCATGAAGTCATATTTTGATGAGGAGAATCTTCCGTCAGAGTTTGGAGGAAAAGCCCAACTGGAATATGTCCATGAGGAGTACTCTAGGTTAATGATTCAAGATGATATTAAATGTGCTGCCTTCTGGGAACATGGTGAAAAGCAACACCATATTGTCAATGGCTACTCCAGTGCAGTGGTGGCTCCAGAGTGA 1269 43.74 MRLITRAFQECDTWRVLDRWFIPIFAFRACTGGGDSKKNIQHLFHNVWRNREIAVTTTDTDLKESGLRPGRSVEDELDSNSALLTCLNPNYLESAGDFLWYFLAAAFEVFCRQITDVFASEDSGSIFQQLRDCTALMFGRWSTSHHEEENNPEQITSKVNELKAKLGSLVGRNAIYCSDACLKRYLVARNWNVDKAKKMLEETFKWRSMYKPEEIRWPEIALESETGKLYRASFHDREGRSVLIMKPGKQNTASIENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLSTSVPIKSARETVNILQNHYPERLALAFLYNPPRIFETFWKVVKYLLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDIKCAAFWEHGEKQHHIVNGYSSAVVAPE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32799836 32803144 - CePI673135_05g021020.1 Cec05g2102 203905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2102 422 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 217 381 IPR001251 -
Cec05g2102 422 SMART sec14_4 223 378 IPR001251 -
Cec05g2102 422 FunFam Phosphatidylinositol transfer protein 3 139 410 - -
Cec05g2102 422 Gene3D - 139 410 IPR036865 -
Cec05g2102 422 CDD SEC14 235 376 IPR001251 -
Cec05g2102 422 Pfam CRAL/TRIO, N-terminal domain 178 202 IPR011074 -
Cec05g2102 422 PANTHER GH16843P 144 407 IPR052578 GO:0008526(PANTHER)
Cec05g2102 422 SUPERFAMILY CRAL/TRIO N-terminal domain 146 219 IPR036273 -
Cec05g2102 422 SMART CRAL_TRIO_N_2 178 203 IPR011074 -
Cec05g2102 422 Pfam CRAL/TRIO domain 226 375 IPR001251 -
Cec05g2102 422 SUPERFAMILY CRAL/TRIO domain 217 393 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2102 K26544 - - csv:101203752 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0595 Cec-Chr4:24397653 Cec05g2102 Cec-Chr5:32799836 2.60E-70 transposed
Cec07g1013 Cec-Chr7:24738604 Cec05g2102 Cec-Chr5:32799836 1.30E-107 transposed
Cec11g1589 Cec-Chr11:30201512 Cec05g2102 Cec-Chr5:32799836 6.00E-70 transposed
Cec04g1644 Cec-Chr4:35712807 Cec05g2102 Cec-Chr5:32799836 1.40E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82