Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2218 ATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCCGGACTCTTCCTCATCGCCTCCCTTATTCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGTTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTCGACATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACCAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA 675 46.67 MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHPDSSSSPPLFINNPPYNNFPQSTVSFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33719264 33719938 - CePI673135_05g022180.1 Cec05g2218 204021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2218 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 31 201 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2218 224 FunFam BHLH transcription factor 134 197 - -
Cec05g2218 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983(InterPro)
Cec05g2218 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 190 IPR036638 GO:0046983(InterPro)
Cec05g2218 224 CDD bHLH_AtIND_like 132 188 - -
Cec05g2218 224 MobiDBLite consensus disorder prediction 32 95 - -
Cec05g2218 224 MobiDBLite consensus disorder prediction 26 95 - -
Cec05g2218 224 SMART finulus 137 186 IPR011598 GO:0046983(InterPro)
Cec05g2218 224 Gene3D - 134 196 IPR036638 GO:0046983(InterPro)
Cec05g2218 224 Pfam Helix-loop-helix DNA-binding domain 140 181 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1234 Cec-Chr4:31887456 Cec05g2218 Cec-Chr5:33719264 2.40E-33 dispersed
Cec05g2218 Cec-Chr5:33719264 Cec09g0037 Cec-Chr9:357015 2.30E-30 dispersed
Cec02g1338 Cec-Chr2:30386777 Cec05g2218 Cec-Chr5:33719264 1.00E-40 transposed
Cec04g0819 Cec-Chr4:27857040 Cec05g2218 Cec-Chr5:33719264 1.70E-21 transposed
Cec04g1382 Cec-Chr4:33453695 Cec05g2218 Cec-Chr5:33719264 3.30E-06 wgd
Cec05g2218 Cec-Chr5:33719264 Cec08g1655 Cec-Chr8:27890832 8.00E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29631 PF00010 HLH 1.40E-06 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2218 - - - 0.0