Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2218 | ATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCCGGACTCTTCCTCATCGCCTCCCTTATTCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGTTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTCGACATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACCAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA | 675 | 46.67 | MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHPDSSSSPPLFINNPPYNNFPQSTVSFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33719264 | 33719938 | - | CePI673135_05g022180.1 | Cec05g2218 | 204021 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2218 | 224 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 31 | 201 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2218 | 224 | FunFam | BHLH transcription factor | 134 | 197 | - | - | |
Cec05g2218 | 224 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 131 | 180 | IPR011598 | GO:0046983(InterPro) | |
Cec05g2218 | 224 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 136 | 190 | IPR036638 | GO:0046983(InterPro) | |
Cec05g2218 | 224 | CDD | bHLH_AtIND_like | 132 | 188 | - | - | |
Cec05g2218 | 224 | MobiDBLite | consensus disorder prediction | 32 | 95 | - | - | |
Cec05g2218 | 224 | MobiDBLite | consensus disorder prediction | 26 | 95 | - | - | |
Cec05g2218 | 224 | SMART | finulus | 137 | 186 | IPR011598 | GO:0046983(InterPro) | |
Cec05g2218 | 224 | Gene3D | - | 134 | 196 | IPR036638 | GO:0046983(InterPro) | |
Cec05g2218 | 224 | Pfam | Helix-loop-helix DNA-binding domain | 140 | 181 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1234 | Cec-Chr4:31887456 | Cec05g2218 | Cec-Chr5:33719264 | 2.40E-33 | dispersed | |
Cec05g2218 | Cec-Chr5:33719264 | Cec09g0037 | Cec-Chr9:357015 | 2.30E-30 | dispersed | |
Cec02g1338 | Cec-Chr2:30386777 | Cec05g2218 | Cec-Chr5:33719264 | 1.00E-40 | transposed | |
Cec04g0819 | Cec-Chr4:27857040 | Cec05g2218 | Cec-Chr5:33719264 | 1.70E-21 | transposed | |
Cec04g1382 | Cec-Chr4:33453695 | Cec05g2218 | Cec-Chr5:33719264 | 3.30E-06 | wgd | |
Cec05g2218 | Cec-Chr5:33719264 | Cec08g1655 | Cec-Chr8:27890832 | 8.00E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29631 | PF00010 | HLH | 1.40E-06 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2218 | - | - | - | 0.0 |