Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2232 | ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTCGGTTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCTCGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA | 456 | 52.85 | MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLLASNSNSNSATQISDKPDLNEYPNPETSDDD | 151 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33814343 | 33814798 | - | CePI673135_05g022320.1 | Cec05g2232 | 204035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2232 | 151 | Pfam | AP2 domain | 29 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2232 | 151 | CDD | AP2 | 29 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2232 | 151 | ProSiteProfiles | AP2/ERF domain profile. | 28 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2232 | 151 | MobiDBLite | consensus disorder prediction | 121 | 138 | - | - | |
Cec05g2232 | 151 | PRINTS | Ethylene responsive element binding protein signature | 29 | 40 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2232 | 151 | PRINTS | Ethylene responsive element binding protein signature | 67 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2232 | 151 | FunFam | Ethylene-responsive transcription factor 2 | 27 | 86 | - | - | |
Cec05g2232 | 151 | SMART | rav1_2 | 28 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2232 | 151 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 13 | 150 | - | - | |
Cec05g2232 | 151 | MobiDBLite | consensus disorder prediction | 121 | 151 | - | - | |
Cec05g2232 | 151 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cec05g2232 | 151 | SUPERFAMILY | DNA-binding domain | 28 | 86 | IPR016177 | GO:0003677(InterPro) | |
Cec05g2232 | 151 | Gene3D | AP2/ERF domain | 27 | 87 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g1286 | Cec-Chr2:29535832 | Cec05g2232 | Cec-Chr5:33814343 | 1.40E-39 | dispersed | |
Cec05g2232 | Cec-Chr5:33814343 | Cec08g0152 | Cec-Chr8:2914168 | 1.10E-20 | dispersed | |
Cec04g1387 | Cec-Chr4:33511712 | Cec05g2232 | Cec-Chr5:33814343 | 3.60E-39 | wgd | |
Cec05g2232 | Cec-Chr5:33814343 | Cec08g1666 | Cec-Chr8:27992916 | 1.10E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29634 | PF00847 | AP2 | 2.20E-11 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2232 | K09286 | - | csv:101219005 | 268.855 |