Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2232 ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTCGGTTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCTCGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA 456 52.85 MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLLASNSNSNSATQISDKPDLNEYPNPETSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33814343 33814798 - CePI673135_05g022320.1 Cec05g2232 204035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2232 151 Pfam AP2 domain 29 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2232 151 CDD AP2 29 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2232 151 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2232 151 MobiDBLite consensus disorder prediction 121 138 - -
Cec05g2232 151 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2232 151 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2232 151 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Cec05g2232 151 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2232 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 150 - -
Cec05g2232 151 MobiDBLite consensus disorder prediction 121 151 - -
Cec05g2232 151 MobiDBLite consensus disorder prediction 1 28 - -
Cec05g2232 151 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
Cec05g2232 151 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1286 Cec-Chr2:29535832 Cec05g2232 Cec-Chr5:33814343 1.40E-39 dispersed
Cec05g2232 Cec-Chr5:33814343 Cec08g0152 Cec-Chr8:2914168 1.10E-20 dispersed
Cec04g1387 Cec-Chr4:33511712 Cec05g2232 Cec-Chr5:33814343 3.60E-39 wgd
Cec05g2232 Cec-Chr5:33814343 Cec08g1666 Cec-Chr8:27992916 1.10E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29634 PF00847 AP2 2.20E-11 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2232 K09286 - csv:101219005 268.855