Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2240 ATGCTCCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGGGGATGCTACTACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTACGTTTGATGTCCCATACTCCTAATCACCAACACTCCCAAGACGATTCTTCTGCTTCCACTACTCCTAATGCTATCGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAATAAATTCAAGAAGGTCATTTCTTTGCTCGACCGAAACAGAACCGGCCACGCACGTTTCAGAAGGGCTCCGGTTCTTACTACTACACCGCCCCCTCCTCCTCCGCCCAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAGATTCAAGTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACTCCCATCAGCCTTCACATCCACCCAATACCTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCACCCCCGATTTCCGCTGCAAATTCGTATATTTCATCATTAACCGGAGACACCGAAAGCTTACAGCCATCTCTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCATCTTCTTCGCTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCTTCCGGCCGGTGTCACTGTTCCAAGAAGAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGATTACTCCTGGAGAAAGTACGGTCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA 1164 48.71 MLLLNNNMAVELMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNHQHSQDDSSASTTPNAIAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVLTTTPPPPPPPKVKPQHQDPSSSSPISVPQIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNSHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33863963 33865557 - CePI673135_05g022400.1 Cec05g2240 204043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2240 387 ProSiteProfiles WRKY domain profile. 309 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2240 387 Pfam Plant zinc cluster domain 267 312 IPR018872 -
Cec05g2240 387 MobiDBLite consensus disorder prediction 107 146 - -
Cec05g2240 387 SUPERFAMILY WRKY DNA-binding domain 312 373 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2240 387 FunFam WRKY transcription factor 65 298 375 - -
Cec05g2240 387 Gene3D WRKY domain 299 375 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2240 387 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 35 376 IPR044810 GO:0003700(InterPro)
Cec05g2240 387 SMART WRKY_cls 314 374 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2240 387 Pfam WRKY DNA -binding domain 316 372 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2240 387 MobiDBLite consensus disorder prediction 115 130 - -
Cec05g2240 387 MobiDBLite consensus disorder prediction 131 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0833 Cec-Chr2:9990782 Cec05g2240 Cec-Chr5:33863963 4.80E-68 dispersed
Cec05g2240 Cec-Chr5:33863963 Cec09g0731 Cec-Chr9:6658536 6.20E-47 dispersed
Cec05g2882 Cec-Chr5:38992546 Cec05g2240 Cec-Chr5:33863963 3.40E-60 transposed
Cec06g1579 Cec-Chr6:29397387 Cec05g2240 Cec-Chr5:33863963 9.00E-56 transposed
Cec04g1391 Cec-Chr4:33561687 Cec05g2240 Cec-Chr5:33863963 1.10E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29636 PF03106 WRKY 4.00E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2240 - - - 0.0