Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2245 ATGGCTGCTTCTTTGCTACTCAGGGGGCATCCTCTCCTGCGGTTAGGGCTTAGGCATCGCGGTCTGTGTACTGGGATTGTGCAAGTGACTCGCCGGTCTTGCTGCACTGCCACGGCGGCATCTACTCCACCGGACGGCAACTTAACATCTGCTGAAAATACTACCTCAGTGTTGAGTGCCACTGAGCCACCAAAGTACCAAAGATGGGACGAACCTGATTACCGGAAGTGGAAAGGCCAGGAAGTGGAAATTCTCAGCGACATCGAGCCTGTCATATGCCTCGCTAAAGAGATCCTCCACTCAAATAGGTATGCAGATGGGGAGCGATTGACATCTGAGGATGAGAGAATTGTGGTAGACAGGCTTCTAGCGCATCATCCACATTCTGAAGATAAAATTGGATGTGGACTTGAATCCATTATGGTCGACCGGCACCCCCAATTCCGGCACTCAAGATGCCTCTTTGTTATAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGGGCATATATACGAAATAAATACCCGTCTTATGCAGAGCGGTTTATTCGAGAGCATTTCAAACGTGATCCAGATCTTGCGCATGTTGTAAGGTTCATGATGAACCAACCATTCAAGAGAAGAGAAATAATCAAACCACAGACGCATGAGTACAGGTTGAAGGGGTTGATGATTGCAGCTGTAATGGCAGGAAGTGTGATGGATCAGAGAGATACATCTGAAAGCAAAGGTGGGTCCCTGTCACAGTCAAGCTTATTATTGGAAGGGATCAAGTCAAAAGAGTCGAGCGGCCTAATGAATCGCTGTGCTCTTTCAAGGCTTTCATTTGTCAAAACGGTGGTAAAGCAGTGGTTTGGGAGTTTAGTTTATGGACCGGCTTGGCTGTCTATATGGCCCACGAGGACATTAAGCATATCATCCCCCAAACCCCTAAAAATAAAACCTCAACCACCATCTCTTTCCTCCAAATTCCCATCCTTCTACGACGGTGCTGGGAAAGGTCACCAGAATTCTTCACTTCTTCTTGATTCTCTCTACTGCTTTGAAGAGGAGCTTGGAGATGGCCATTCCCAACCAAAGGTCGAAGCTTTCTCAATCAATGTTAACATCAATTCCCCAAACTCTGTGTTCTTGTCGGACAGAGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAAAAATAAGCTCCACAACATTCTCCCACACAATCCTTCTCTAACTGCAGCTCGCTCCAAGGCGGTTGAATGGATTCTCAAGGTCAATTCCCATTACTCTTTCACTGCCCTCACCGCCGTTTTGGCTGTTGATTATGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTCTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAGACCATTACAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTTTGGACTATATTGTAAGACGCCTCGGCTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAGATGTGAAAGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTTCCATCTGTAATAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCAAGTCGCCGCAAAATACCAGGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAAATGGAGGATTGCTCACGATTCATCTTAGAGGCTTCATCGAGAGGACACAAACACGAGTGGAAGAATAAACAAAGATTTGGTTTAGTCGACATGTCGTGCAGCTCAGATGATGGGAATAGGAATGTGGACATTGTCGTGTCCTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAGCCACCGTAG 2007 45.79 MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAASTPPDGNLTSAENTTSVLSATEPPKYQRWDEPDYRKWKGQEVEILSDIEPVICLAKEILHSNRYADGERLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRDPDLAHVVRFMMNQPFKRREIIKPQTHEYRLKGLMIAAVMAGSVMDQRDTSESKGGSLSQSSLLLEGIKSKESSGLMNRCALSRLSFVKTVVKQWFGSLVYGPAWLSIWPTRTLSISSPKPLKIKPQPPSLSSKFPSFYDGAGKGHQNSSLLLDSLYCFEEELGDGHSQPKVEAFSINVNINSPNSVFLSDRDFLWEDEELVSLFSKENKNKLHNILPHNPSLTAARSKAVEWILKVNSHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCRCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPQVAAKYQDQLLGILQIDKDKMEDCSRFILEASSRGHKHEWKNKQRFGLVDMSCSSDDGNRNVDIVVSSPETATKKRKIDEQPP 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33906360 33915244 + CePI673135_05g022450.1 Cec05g2245 204048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2245 668 FunFam D6-type cyclin 404 521 - -
Cec05g2245 668 MobiDBLite consensus disorder prediction 645 668 - -
Cec05g2245 668 ProSitePatterns Cyclins signature. 421 452 IPR048258 -
Cec05g2245 668 Pfam Protein of unknown function (DUF3223) 96 172 - -
Cec05g2245 668 PANTHER PROTEIN EMBRYO DEFECTIVE 514 62 195 IPR044673 GO:0009507(PANTHER)|GO:0009658(PANTHER)|GO:1901259(PANTHER)
Cec05g2245 668 SMART Cyclin_C_2 523 640 IPR004367 -
Cec05g2245 668 SUPERFAMILY Cyclin-like 390 521 IPR036915 -
Cec05g2245 668 SMART cyclin_7 426 514 IPR013763 -
Cec05g2245 668 SUPERFAMILY Cyclin-like 524 619 IPR036915 -
Cec05g2245 668 Pfam Cyclin, C-terminal domain 523 622 IPR004367 -
Cec05g2245 668 Pfam Cyclin, N-terminal domain 403 521 IPR006671 -
Cec05g2245 668 CDD CYCLIN_AtCycD-like_rpt1 420 518 - -
Cec05g2245 668 Gene3D - 87 178 - -
Cec05g2245 668 FunFam Protein DCL, chloroplastic 86 178 - -
Cec05g2245 668 Gene3D - 522 610 - -
Cec05g2245 668 CDD CYCLIN_AtCycD-like_rpt2 523 609 - -
Cec05g2245 668 FunFam CYCLIN D32 522 611 - -
Cec05g2245 668 Gene3D - 418 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0664 Cec-Chr2:6803829 Cec05g2245 Cec-Chr5:33906360 9.90E-58 dispersed
Cec05g2245 Cec-Chr5:33906360 Cec08g1180 Cec-Chr8:23697968 1.80E-33 dispersed
Cec04g1399 Cec-Chr4:33623813 Cec05g2245 Cec-Chr5:33906360 4.30E-60 wgd
Cec05g2245 Cec-Chr5:33906360 Cec08g1670 Cec-Chr8:28028145 7.60E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2245 K14505 - csv:101218302 554.673