Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2257 ATGATTGGGAATTTGGGATCCTCCGAAAACAAAGAAACGCTGGCGTTTCAGTTTAAAACCCGGGAAATCCCAGGTCACACTGAAACTATGGCGGATAAGGAGAATATATTTCGATTTACTAGGGGTTCTAAGAAGAGGGCCGCCGAAGCCGCTACCCCCGACGACCGCTCTGCTAACAAGAAGAGAGTCGTTCTTGGAGAGCTCCCTATTTTACAGAATGCTACTTCTTCCGTCGATCGTAAGTCCAGGTCTAGAGCGACCAGGCAGAGGCGGAGAGTAAAATCAAGGGATACTGCCGGCACAAGTGCTGCTGCTGCTGCTGCTCCTGAAATCAATACACTTCCGGAAGGCGATGTCAAGTTATCAGATGAGGGCAATTCGGAAGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGCATATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAAGGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCTCTAAATGAAATCAGCAGGCAAAAACTTCAGTTGCTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAAGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGAGATTCACAATGATTGCTCAAGAGACTTATGAGTTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTCATATTTCTAGCACGATTTATGATCCAACCTAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATCAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTATCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1221 42.1 MIGNLGSSENKETLAFQFKTREIPGHTETMADKENIFRFTRGSKKRAAEAATPDDRSANKKRVVLGELPILQNATSSVDRKSRSRATRQRRRVKSRDTAGTSAAAAAAPEINTLPEGDVKLSDEGNSEDPQMCRVYASDIYAYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNEISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADIKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33994556 33997080 - CePI673135_05g022570.1 Cec05g2257 204060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2257 406 SUPERFAMILY Cyclin-like 270 395 IPR036915 -
Cec05g2257 406 PANTHER CYCLINS 123 381 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec05g2257 406 SMART cyclin_7 274 362 IPR013763 -
Cec05g2257 406 SMART cyclin_7 177 261 IPR013763 -
Cec05g2257 406 Gene3D - 139 389 - -
Cec05g2257 406 FunFam Mitotic cyclin 6 155 255 - -
Cec05g2257 406 Pfam Cyclin, C-terminal domain 270 392 IPR004367 -
Cec05g2257 406 CDD CYCLIN_AtCycA-like_rpt2 270 384 - -
Cec05g2257 406 MobiDBLite consensus disorder prediction 42 61 - -
Cec05g2257 406 SUPERFAMILY Cyclin-like 128 267 IPR036915 -
Cec05g2257 406 Pfam Cyclin, N-terminal domain 139 267 IPR006671 -
Cec05g2257 406 PIRSF Cyclin_A_B_D_E 6 397 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cec05g2257 406 SMART Cyclin_C_2 270 393 IPR004367 -
Cec05g2257 406 Gene3D - 153 268 - -
Cec05g2257 406 MobiDBLite consensus disorder prediction 74 128 - -
Cec05g2257 406 FunFam Cyclin A1 257 389 - -
Cec05g2257 406 ProSitePatterns Cyclins signature. 172 203 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0707 Cec-Chr2:7403638 Cec05g2257 Cec-Chr5:33994556 1.70E-84 dispersed
Cec05g2257 Cec-Chr5:33994556 Cec08g0619 Cec-Chr8:17738459 4.80E-82 dispersed
Cec05g2257 Cec-Chr5:33994556 Cec08g1681 Cec-Chr8:28093077 8.60E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2257 K06627 - csv:101207493 662.529