Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2272 ATGAGTTGCAACGGTTGCCGAGTGCTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTTCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTCCAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCAATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA 612 51.31 MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34078014 34078731 - CePI673135_05g022720.1 Cec05g2272 204075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2272 203 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cec05g2272 203 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cec05g2272 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 121 - GO:0010468(PANTHER)
Cec05g2272 203 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1437 Cec-Chr4:33980341 Cec05g2272 Cec-Chr5:34078014 7.30E-51 dispersed
Cec05g2272 Cec-Chr5:34078014 Cec05g2493 Cec-Chr5:35976194 8.90E-37 dispersed
Cec05g2272 Cec-Chr5:34078014 Cec06g1686 Cec-Chr6:30440467 3.10E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29638 PF03195 LOB 9.40E-24 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2272 - - - 0.0