Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2275 GTCCTCGGAAAGGATCAATCATTCCGAAACTGGATGATTACGCAGTATAAGAGGCTCTGTGACCTGCCATCCTTTAGAGCTTTAGCAGATGTAAGATCTGCTCTGGAAGGAATTTTTGAATCATTTTCCGAGTTAATGAACAACGAAGATAATCAAGTGAATATGGATGAGGAAATGTCTGATTCCTTGAAGCATTCTACTCGTAATAGATGTGAAATTTCCATGGAACTATCTGATAAAAGGAGAAAATTGAGGCATTGTGATTCCCTTGAAGATGGTGTCAATGAAAAAGTTTCTGGTCAACATCGTTCGTCAATTCCTCTTGATGGTAAGCACACCACGTGTTCTGATTTTGATGCTGTCAGCATGAGACCCATGGCCTTTGATGTTCAGGAGCCTGGAGGTTTGCTACATGGCAGTTTGCCCCAGTCGCAGGATCCTTTGAGCAAGCACGATCATTTGTCTTATGCAAAAACATCATTAGACCTGCAGAACAATTCTTTTGAATGTACAAAGCATTCAATTGATGGCAATCAAGTTTCAAGTGTTGATCGGAACTTTCCTGCTCAGAGATTGTCTATTGGAGATATCAATGATGATCTTGTGCCTCCTAGACATCAGCTATCAGTGCCATGTAGTTCTACAACTTCTCAGAGTTTGTGGTTTTCTGATGGAGATCCATCAGCCATGGATATCTTCTCTGCTTCCAAACAACTATGGGTGGGTCTTTTAGGCCCTGAGACATCTGAAGCTCACATAAGGTATCAATTTGAGAGGTTTGGTTACATTGAACATTTTTTCTTCTTTCCATTAAAAAGGTTTGCAGTAGTGGAGTATGGTCACATCATTGATGCCATAAGGGCACGTGAATATATGCGTGGACAATTTCAATGGTGTGTAAAATTCATGGATATTGGTTTGGGAACTAGGGGTTCCGTCCACGGGGCTGCAATTGGTTCCAGTTTTCATGTTTATGTTGGAAATGTTTTGAGCTACTGGGGGAAGGATGAGATTCTGCATGAGACAAGGAAAGCACTTAACAAGGGTCCATACATGGTCTCTGATCTTGGCAACGAGGGTGCATTGCTGATGGAATTTGAGACTCCAGAAGAAGCTACACTTGTGATGGCACATCTCAGACAACATCGAAGGGAAAAGAATATTCACTGGCCTCCTCCAAATGCAGGACAAACGAATATTGCACCGCCCTATTTAGATGGTGGAAGATCTGCTTGTGTCTCTACTGGTGGTAACATCAGAAGCAACAATCCTGCGAACATGCCCAATAGTATGGTTGGGTCACCTCATGCTCCGATGGTCCCAGAGAGTCCTAACTTCAGGACAAGAATGTCAGAGCTATCTTCCTTACTTTATACACTGCGTGCAAAATACAACATCAATCAAAACTCAAGTTATTTTGAAAACTACATATCTGGAAGTTGCAATACTTCAATGAGGGAAGAAGACAGAACTCCTACTAGCACTCTCTGGATTTCTTTTCCAAATTTTAATTCTCCTTTTGTCACTGATGAGGAATTGATGAAGATCTGTAATCTTGCCATGACCAACACTGGGTCTGTTGTGAGGATGACTCGAGCAAGTGTACAGGTGGGCTGTGGTTGGTTTGTTGAGTGCAGTAGTGTAGATGCTGCAATAACCGTCTTGAAGAATCTCCGTGGTTGTCCTGGAATTTTTCTTCGAATAGAATTCAGTAAACCAGGAAGGTTCCATGCGGCACCTTTTCTGAGGCATGATAGTTGTGCTATGGATCATCCATCTCCCAGAATATTACATGAGAATCATGCAATACCACCTCAACAAGGTGGATATTCCTATCAGTCAAACTGGGCTCCTTCCGGTGGTCATACAGAGATGCTTGAAATAGGGGTCGGAAAGACTGATGCTTGTGAAAAAAACCTGCTGATAGATCATCCACAAGGTGGCCACATAGTCTCTGGAACCATTCCATGCTTGCCCATATCAACAATGGGACCTCCCGCCCCACCACCTCCACCACAGATTCAGCCACCTCCATTTGTTCGATCTTCATACCCTCCTCCAAACAGTTCTTGGGATGCAAGGGGTTTAAACCATCCTTTGCCTTTACATCCAATATCACCAAGTGTTATACCTAATAATTTTCCGAGTAATTCTGTTGCATGCCCTCCCTTTTTACCTGCTTCAGTGACACCCCTTGCTCAGATACAAGGAACTCCAATGCAGCAGCATCTAGACCATGTTTTTCCCCATCCTGTTGCGCCACCATCAATATCTCTACCACCTTCCTGGCCCGAGATGCTTCCTCCCATGCCTTCATCTCCACCACCTTTGCCTCACTCACAACCGCCTAATATTCCTCCTCCACCCAGTTCTCCTCCGCCTCCACCTCCACCCCTAGCTGCCACAGGAACTAGTGAAGTGAAAAATTGTAGCCAGCATGTTCTATATCAATGGCAAGGAGCACTTTGTAAAAGTGGAGTTCAGTACTGTACAATTTATGCAAAAAGCGTGGATTCCCAAACTTGCAAATACTTAAATGCTGGTCCAGAACCTATTGAGTGGCCTGCAAAATTAGATATGACCAAACGCACAGATTTTAGGCATGTGAAGACGACATTCACCAGCACTTCACCAAGTAAAAGGGAGATATGTCAGCTGATCCCATCTTCTGGTGGAGACCATAAAGGATTTCAAGATTTTGTATCGTATTTGAAGCAGAGGGATTGCGCAGGAGTCATAAAAATACCGGCCACTAAATTGCTATGGACCAGGCTTCTCTTCATACTTCCATATTCACAGGACTCGTGTTCTCTGCTCTCAATTCCACCAGGCCCACCAGATAGCCTGATTGCCTTGGTTCTTCCTAAAGAAACAAACTTCGAATGGATTCGCTCGTCGGAGTCCAAAGTGGAATTCCAAACCCAAGTTCGGTTTGGCAGTCGGCAGCCACCAATTACAAAGCCAAAGAAAGGTATAAATTACAAAGCCAACCGATTCGTCTTCCTCTTCCTCCTCTCCACCCGGCGCTTTCTTCTTCCTATCCGATCACCAACGAAGTCATCTGAATTCAGAATGTCTAATCGTTACAATCACGATGGAAACAAGGGTTTAAGGAAAGACCAGAAGAAGTACATCCCCAAGAATCAAAATCAATCCACAAATGAACTCCCCAACCCTAAACCTACCCTTTCCACTTCTCTCAGACAATCGCTGCCTAAACCATCCGATTCTGCTGCTGTTACCACTTCTGCCGCGCCATCAATGAGTCGGATTCAGATGGGTGCGAATGGAGACTGGGTGTCTAGCAGAGCTAGTGGTGGCAGTTTCGTGAATTACTTGCCACAGGACGAGGCCGTTGCCACTGGTCTTCGTGCCGAAGAAGGAGCATTGGATCCGGTGGAATCTCAAAGAGTCGTAGACCTTTTAAACAGAGAGTTGTCTCGGCTGCTCAAGTTGAGTGCTAAAGAGTTTTGGAGGGAAGTGGCTATGGATACTTCCTTGCTTGAATTTCTCGACAGCTTCCTAAAATTCAGGAGTAGATGGTATGATTTTCCACATCGTGGAGCAAATGGAATAGTTGCAGGGGTCATAGTTGGAGAATATGAATTAAGCCGCCGTGTTTTCATGGTATTGTATCGCATGTCTTCCAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGAGTGCTCTGGAGCAGTTTTGTCGTCACTTATTTCTACCTTGTTTATGATATTAGTGCACATAAGGTGATACGGGTGATAGGACATCTTTTACCCATCGGTTTTACCAATAACCATGAACATCATGTGTACGAAGAATCTGATACTTCTTTAAAAGCATGGATAGACACTAGGTGCATCTTAGTTGTATTGCTCAGTATCAAGGAAAACCTCACTTTAGGCATGCATCTGGGAAAGAAGTTGCTTGACCTTCCAAAGTTACTTGATATATGTGCTATATATAGTCATGAGAATGAAGATCTAACTAGAATACTGGTTGAGAATGCTATAAAATCCCAGCCTAGTATTCATGAAACTTTACCGTCAGTTATATCGCACTTCCTCAGCATTGCCTCTATGATGCATCAAAGGTGCAACTCATCTCTTGAGACTCTCTTCTCCTCGAGTAGCCATGGAGGAAGTGGGTACAGTAAGCTTCAAGCTGACTTCTTGGAGGTGATTGATTTTATCAATGATGCCATTGTCACTCTGGACTCTTTCATCACTGCATACAGACTGGCAGCTATATTCTTCTCCTCTGCAGTTGAAATAAGCTGCGGGAATGAGGATTTGCTGGGAACTCTTGCAAGGTTGCATGATTTACTACTTCCATCTTTACAGCAGGGATTTCAAATTGTCCTTGTGCCCCAAGGAGATGAAATGATGTCTAATGTTGCAACAAGTTTAAAAATGCTAGCATTAAGAATTGTGAGTCTTGGTTGGAAACTGCTGGAAATCTGCTATCTAGGTGACGAAGTGTTTGGAAATGACCTCCCTGTTCCAGTCTCTATGAAGATGTTCCCTGCAACTGTCGAAGATCCTGTCATAAGAGCAGATATCTTGATTCAAACTTTACGAGAAATCAATGGAATCCCGCAACAGGCTTCAGATAAACAACTTGCTCAAACATTTCTTCAGCGTATGGAAAAGAACCACTCCATAATGAACAGAATCAAAAGTTTACGAAACACTGGATGGATATTTGTCGATGATGAACAATTTGATTATCTATCAACAATTGTTATGTATACCCCCACGTCTGATATTAAGGATCCATCTCTTTCTAAGGTCCCTGTGATGAGCCACATATCAGAAGTAGATGAGGATGCTGCAATGTTGGAGTCGAAAATCTGCCAAGTAAAGGATCTTTTCCCTGAGTATGGCAGTGGGTTTCTAGCTGCATGTCTGGTAGCTTATAATCAGAACCCTGAAGAAGTGATTCAACGAATACTTGAGGGAACTCTTCATTCTGATCTTCAGTCCTTGGACACTTCCTTAGAAACAATGCCAGTACCCAATTCTAGTGCGACTGCTAATAATAGGAACGACAAAGGAAAAGGAAAACTGTTTGAGTCTTCAACAGTTGATTACACTGACCAAGTTTCTTGTGGTAAAGATTCACTGTCTGAAGGCCCTTCAGTTTTATCACCTTCTGTTGGCAGATTTGTTCGAAAGTCTAAAGATGACATGCCGTACTCAGAGACCCTTGACAATAGAAATGAAGCAGATCCAGTGAGGACTGCAGCTTTAATTTCTCAATATGAGTATGAAGATGAGTATGATGACTCTTTTGATGATCTTGGTATTAGCATAGCAGAGACAGCTACAGAAGATAATGAAGACTTGGTAAAGCTAAGTTCCCATTTAGGCAGCTCATCGAACTCAACAAATGGAAGTTCAGCGCAAAATGCTCTCAACTCAAAGTGGGGATCTAGAAGAAAACCACAATACTATGTCAAGGATGGTAAGAATTATAGTTACAAAGTTGCAGGGTCAGTTGCGGTTGCCAATTCTGATGAGGCATCTTTAGTAACTCAAGCTCAGAAAGAACTCATTTATGGACTTGGACGCGGAGGCAACTTACCTCTCGGGGCAGTAAAAAAGCTGACAGAGTCTGAGCAGGATAGCCAACCTGATGTTTCTGAAGTAGATCCAAGAGATAATGTACGGAAGTCTTGGGGCAGAGGAAGGAGGGAAAGGGAAAGTGGAAGAGCTGCAGGCATGCCTGAAGGGCAAGGTAAACAACCAATTGTGGCTGAGGTTTCAGAGAGGGGAGGAAGAGGCGGCAACCGAGGCCGTGGAAGGAGAGGAGGGGGCGACCATCACAGGAAGGATAGAGCCATGAAAAAGCATTTTGCTGGATTGTCTGGTTTCTAA 5895 43.43 VLGKDQSFRNWMITQYKRLCDLPSFRALADVRSALEGIFESFSELMNNEDNQVNMDEEMSDSLKHSTRNRCEISMELSDKRRKLRHCDSLEDGVNEKVSGQHRSSIPLDGKHTTCSDFDAVSMRPMAFDVQEPGGLLHGSLPQSQDPLSKHDHLSYAKTSLDLQNNSFECTKHSIDGNQVSSVDRNFPAQRLSIGDINDDLVPPRHQLSVPCSSTTSQSLWFSDGDPSAMDIFSASKQLWVGLLGPETSEAHIRYQFERFGYIEHFFFFPLKRFAVVEYGHIIDAIRAREYMRGQFQWCVKFMDIGLGTRGSVHGAAIGSSFHVYVGNVLSYWGKDEILHETRKALNKGPYMVSDLGNEGALLMEFETPEEATLVMAHLRQHRREKNIHWPPPNAGQTNIAPPYLDGGRSACVSTGGNIRSNNPANMPNSMVGSPHAPMVPESPNFRTRMSELSSLLYTLRAKYNINQNSSYFENYISGSCNTSMREEDRTPTSTLWISFPNFNSPFVTDEELMKICNLAMTNTGSVVRMTRASVQVGCGWFVECSSVDAAITVLKNLRGCPGIFLRIEFSKPGRFHAAPFLRHDSCAMDHPSPRILHENHAIPPQQGGYSYQSNWAPSGGHTEMLEIGVGKTDACEKNLLIDHPQGGHIVSGTIPCLPISTMGPPAPPPPPQIQPPPFVRSSYPPPNSSWDARGLNHPLPLHPISPSVIPNNFPSNSVACPPFLPASVTPLAQIQGTPMQQHLDHVFPHPVAPPSISLPPSWPEMLPPMPSSPPPLPHSQPPNIPPPPSSPPPPPPPLAATGTSEVKNCSQHVLYQWQGALCKSGVQYCTIYAKSVDSQTCKYLNAGPEPIEWPAKLDMTKRTDFRHVKTTFTSTSPSKREICQLIPSSGGDHKGFQDFVSYLKQRDCAGVIKIPATKLLWTRLLFILPYSQDSCSLLSIPPGPPDSLIALVLPKETNFEWIRSSESKVEFQTQVRFGSRQPPITKPKKGINYKANRFVFLFLLSTRRFLLPIRSPTKSSEFRMSNRYNHDGNKGLRKDQKKYIPKNQNQSTNELPNPKPTLSTSLRQSLPKPSDSAAVTTSAAPSMSRIQMGANGDWVSSRASGGSFVNYLPQDEAVATGLRAEEGALDPVESQRVVDLLNRELSRLLKLSAKEFWREVAMDTSLLEFLDSFLKFRSRWYDFPHRGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHGVLWSSFVVTYFYLVYDISAHKVIRVIGHLLPIGFTNNHEHHVYEESDTSLKAWIDTRCILVVLLSIKENLTLGMHLGKKLLDLPKLLDICAIYSHENEDLTRILVENAIKSQPSIHETLPSVISHFLSIASMMHQRCNSSLETLFSSSSHGGSGYSKLQADFLEVIDFINDAIVTLDSFITAYRLAAIFFSSAVEISCGNEDLLGTLARLHDLLLPSLQQGFQIVLVPQGDEMMSNVATSLKMLALRIVSLGWKLLEICYLGDEVFGNDLPVPVSMKMFPATVEDPVIRADILIQTLREINGIPQQASDKQLAQTFLQRMEKNHSIMNRIKSLRNTGWIFVDDEQFDYLSTIVMYTPTSDIKDPSLSKVPVMSHISEVDEDAAMLESKICQVKDLFPEYGSGFLAACLVAYNQNPEEVIQRILEGTLHSDLQSLDTSLETMPVPNSSATANNRNDKGKGKLFESSTVDYTDQVSCGKDSLSEGPSVLSPSVGRFVRKSKDDMPYSETLDNRNEADPVRTAALISQYEYEDEYDDSFDDLGISIAETATEDNEDLVKLSSHLGSSSNSTNGSSAQNALNSKWGSRRKPQYYVKDGKNYSYKVAGSVAVANSDEASLVTQAQKELIYGLGRGGNLPLGAVKKLTESEQDSQPDVSEVDPRDNVRKSWGRGRRERESGRAAGMPEGQGKQPIVAEVSERGGRGGNRGRGRRGGGDHHRKDRAMKKHFAGLSGF 1964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34111352 34124859 + CePI673135_05g022750.1 Cec05g2275 204078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2275 1964 MobiDBLite consensus disorder prediction 1048 1086 - -
Cec05g2275 1964 Pfam CUE domain 1621 1660 IPR003892 GO:0043130(InterPro)
Cec05g2275 1964 Pfam SPOC domain 816 954 IPR012921 -
Cec05g2275 1964 SUPERFAMILY UBA-like 1618 1676 IPR009060 GO:0005515(InterPro)
Cec05g2275 1964 MobiDBLite consensus disorder prediction 1875 1964 - -
Cec05g2275 1964 MobiDBLite consensus disorder prediction 1793 1814 - -
Cec05g2275 1964 CDD SPOC_FPA-like 817 955 - -
Cec05g2275 1964 Gene3D - 228 310 IPR012677 -
Cec05g2275 1964 CDD CUE_ASCC2 1620 1659 IPR041800 -
Cec05g2275 1964 MobiDBLite consensus disorder prediction 759 801 - -
Cec05g2275 1964 ProSiteProfiles CUE domain profile. 1618 1661 IPR003892 GO:0043130(InterPro)
Cec05g2275 1964 SMART cue_7 1618 1660 IPR003892 GO:0043130(InterPro)
Cec05g2275 1964 Gene3D - 1617 1661 - -
Cec05g2275 1964 MobiDBLite consensus disorder prediction 1878 1911 - -
Cec05g2275 1964 SUPERFAMILY RNA-binding domain, RBD 223 296 IPR035979 GO:0003676(InterPro)
Cec05g2275 1964 MobiDBLite consensus disorder prediction 759 804 - -
Cec05g2275 1964 CDD RRM_SF 239 296 - -
Cec05g2275 1964 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1312 1964 IPR052586 GO:0043130(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2275 K18667 - - csv:101209442 1689.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g657 . Blo12g00984 . Bda03g00185 . Bpe04g00160 . . . . Cma01g01790 Cma09g00286 . . . Cpe06g00196 . . . . . . . . . . . . . . . Cone4ag1611 Cone7ag1341 . . . Csa04g02474 . . . . . . . . . . . Cmo01g01848 Cmo09g00277 . . . Car09g00240 . Cpe02g00217 Bhi09g03233 Tan01g4699 . . . Mch11g0359 . Cla05g02103 Cam05g2255 Cec05g2275 Cco05g2316 Clacu05g2251 Cmu05g2114 Cre05g2238 . . Chy07g00186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59