Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2318 ATGGCCAAAGACGACGCCACCGCCGCGCGACGGTTCTCCGGCAAGGACTACCACGACCCTCCGCCGGCGCCGCTGTTCGACGCTGCTGAGCTCAGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACCATATTGACTGTGATTGGCTACAGCAGCCAGACCGATACCAGTAAGCCCGGCGCCGACGCTTGCGATGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCCGGCATTTCAGGTGGGCACATAAACCCAGCGGTGACGTTCGGGCTATTCTTGGCCCGTAAAGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGAGCCATATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCGTCGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACTGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTATTGGCTCCCCTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATTACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGATAAACCTTGGGATGAACATTGGATATTCTGGGTTGGGCCATTCGTCGGAGCCGCCATTGCAGCCTTCTACCATCAGTTCATTTTGAGGGCCGGCGCCGCCAAGGCTCTCGGCTCTTTCAGGAGCACCCCCTCCGTTTGA 864 56.6 MAKDDATAARRFSGKDYHDPPPAPLFDAAELSKWSFYRALIAEFIATLLFLYVTILTVIGYSSQTDTSKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKDKPWDEHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSTPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34482005 34486903 - CePI673135_05g023180.1 Cec05g2318 204121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2318 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g2318 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g2318 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g2318 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g2318 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g2318 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g2318 287 CDD MIP 38 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g2318 287 FunFam Probable aquaporin PIP1-2 23 285 - -
Cec05g2318 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cec05g2318 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Cec05g2318 287 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cec05g2318 287 NCBIfam MIP family channel protein 42 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g2318 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cec05g2318 287 Pfam Major intrinsic protein 30 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0427 Cec-Chr2:4029701 Cec05g2318 Cec-Chr5:34482005 9.50E-122 dispersed
Cec04g1039 Cec-Chr4:29941518 Cec05g2318 Cec-Chr5:34482005 3.20E-133 dispersed
Cec04g1040 Cec-Chr4:29954846 Cec05g2318 Cec-Chr5:34482005 4.20E-133 dispersed
Cec04g1088 Cec-Chr4:30392241 Cec05g2318 Cec-Chr5:34482005 1.40E-28 dispersed
Cec05g2318 Cec-Chr5:34482005 Cec07g0456 Cec-Chr7:4759260 4.70E-108 dispersed
Cec04g2107 Cec-Chr4:39000645 Cec05g2318 Cec-Chr5:34482005 3.10E-16 transposed
Cec10g2040 Cec-Chr10:35154497 Cec05g2318 Cec-Chr5:34482005 9.50E-117 wgd
Cec05g2318 Cec-Chr5:34482005 Cec08g0780 Cec-Chr8:19589521 3.00E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2318 K09872 - csv:101204956 555.444