Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2340 ATGGGTTCGTCGGAGAAGGAGCTGAAAGATATAATGGTGAATCAATTGCCAGAGTCTGTGAGGGAGATTTCAGGGCTTCCCGAGTATCACGGCATCTGTAAGAAGATGTATGGGGACTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGATGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCCATAGAGCTTCTTGGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAAAAGATTGTGCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCAGACGAGGTTCGAGAACAGACTGAACTTGTTCATGCACAATTCAAACGAGCGAAAGAGAGAGTAAATGTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGACCCTGCAATATTGAAGAGAATTTCTGAAAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCTCAGGGTGTTTTTGGAAAATTGTTGTCCGTTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCAGCAGTTGAAACTTCTCAAGAAGAAAAAGCTACCACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACTTATGAGAGATCGTGCATTCAGAAATGGCTGGATGCAGGGCACAAAACCTGTCCAAAATCTCAACAAGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTATGGTGTGAGAACAATGGCGTCGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCCGGAAACAATGTTTCAGACTGTGATCGAGCGGCCATCGATGCCTTACTTGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGTTACTAGCGAAGAGGAATTCGGACAACAGAATTTGTATTGCTGAGGCAGGAGCCATTCCGTTCCTTGTTGAACTATTATCGTCAAATGATACTAGGACCCAGGAGCATGCGGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTTGATTTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTGATAGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATCGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATAGGGGAAGCTGAGCCGATGGCAATTCTGTTGGAGTTCATTAGAACTGGTTCTCCACGGAACCGGGAGAACGCTGCTGCCGTGTTGTGGTCACTTTGCAGTACTGATTTCGAGCAGTTGAAGCTAGCTAGGGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGAACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTCGATGGACCATCAGCTAATTTATAA 1893 44.27 MGSSEKELKDIMVNQLPESVREISGLPEYHGICKKMYGDLIRRVKLLSPLFEELRDGEDELGLDVLKSLELLKIALDSAIELLGSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVNVADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTINDLKKESLAIHELVISSDGDPQGVFGKLLSVLKKLKDFVQSENPAVETSQEEKATTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGNNVSDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34660502 34663141 + CePI673135_05g023400.1 Cec05g2340 204143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2340 630 CDD RING-Ubox_PUB 250 302 IPR045210 -
Cec05g2340 630 SUPERFAMILY ARM repeat 346 620 IPR016024 -
Cec05g2340 630 PANTHER U BOX DOMAIN-CONTAINING 34 622 - -
Cec05g2340 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 Gene3D - 12 122 IPR036537 GO:0007166(InterPro)
Cec05g2340 630 SMART arm_5 376 416 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 SMART arm_5 499 539 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 SMART arm_5 458 498 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 SMART arm_5 417 457 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 SMART arm_5 540 580 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 Pfam U-box domain 249 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g2340 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 FunFam RING-type E3 ubiquitin transferase 332 625 - -
Cec05g2340 630 SUPERFAMILY RING/U-box 247 323 - -
Cec05g2340 630 Gene3D - 333 620 IPR011989 -
Cec05g2340 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g2340 630 SMART Ubox_2 252 315 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g2340 630 FunFam RING-type E3 ubiquitin transferase 249 322 - -
Cec05g2340 630 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515(InterPro)
Cec05g2340 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 322 IPR013083 -
Cec05g2340 630 FunFam RING-type E3 ubiquitin transferase 9 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0614 Cec-Chr1:6608904 Cec05g2340 Cec-Chr5:34660502 1.80E-54 dispersed
Cec03g0157 Cec-Chr3:1536262 Cec05g2340 Cec-Chr5:34660502 6.40E-116 dispersed
Cec04g1417 Cec-Chr4:33778253 Cec05g2340 Cec-Chr5:34660502 3.70E-17 dispersed
Cec04g1850 Cec-Chr4:37125891 Cec05g2340 Cec-Chr5:34660502 3.10E-13 dispersed
Cec05g2340 Cec-Chr5:34660502 Cec07g0695 Cec-Chr7:12291413 8.40E-09 dispersed
Cec05g2340 Cec-Chr5:34660502 Cec02g2133 Cec-Chr2:38871217 7.30E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2340 K27628 - csv:101221065 1107.82