Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2352 ATGGGCTGCGGCTGCGCCGCCCTTTCCAATTCAGCCGGCGGCTCCGGCATCCACCACTCACGAGCCCCATTTGAAAAAGTTGATGGCAGCAGAGAAAAGATATCACAGAACAAAGCTGTCAGAAACATCCTCAAGTTCCTCATTGTACCTTTGAGGATGTTTCGTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTGTTGCTTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCTGTATGGAGAAGACAAATGCTGTCCGTCGAATCGAAGGATCAAACTTTCTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAACCGACAGCGACTGGCCGACTGCGGTATCGGGTTCGGCCGGGATGCCATGGGCGGCAAAGGCGGAAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACTCCGGGGACTCTCCGGCACGCTGTGATCCAATTCGAACCGCTGTGGATCATCTTCTCCGCCGACATGACTATCAAGCTGAAATACGAGCTTATCATTAACAGTTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATTCAATACGTGTCCAATGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCACGTGGGGCATAGAGGGCTATCAGACGGAGATGGGATCTCAATTTTTAGCTCACGAAGGATATGGATCGATCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGACGCAATAATGGGATCAACAGGAATTACAATATCAAATAGCTACTTCTCGCACCATGATGAAGTGATGTTGTTAGGGCACGACGATCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGCGAGGCATTAGTCCAACGCATGCCCCGTTGTAGACATGGCTACATTCACGTCGTCAACAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGTAGTGCCCAACCCACTATTAACAGCCAAGGCAATCGCTACACCGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGACATTTTGGTGAACGGCGCGTTTTTTGTACCTTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGTGTTTTGGGCGCCCCCAGGTATAATGCAGGTCAAGGAATTGTATATCCGGGATTCAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGTAATGGTAATGATGATTACTACGGCATGATATTTAAAGCTGGTGGTTATAGAGTATTGCCAATATTGCCCTCCATAAACTTATGTACTCAAATTCTATTACTTTTGTACATAGTCGCAAATTATAGTGTCCTATTCACATTATAG 1668 49.34 MGCGCAALSNSAGGSGIHHSRAPFEKVDGSREKISQNKAVRNILKFLIVPLRMFRVLSILLIWMSASIFGVASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSVESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRRIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNAGQGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAGGYRVLPILPSINLCTQILLLLYIVANYSVLFTL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34761519 34772244 - CePI673135_05g023520.1 Cec05g2352 204155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2352 555 FunFam Pectate lyase 122 464 - -
Cec05g2352 555 PANTHER PECTATE LYASE 18-RELATED 68 465 IPR045032 GO:0030570(InterPro)
Cec05g2352 555 SUPERFAMILY Pectin lyase-like 113 441 IPR011050 -
Cec05g2352 555 Pfam Pectate lyase 205 386 IPR002022 -
Cec05g2352 555 Gene3D - 122 464 IPR012334 -
Cec05g2352 555 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cec05g2352 555 PRINTS Pollen allergen Amb family signature 413 437 IPR018082 -
Cec05g2352 555 PRINTS Pollen allergen Amb family signature 205 221 IPR018082 -
Cec05g2352 555 PRINTS Pollen allergen Amb family signature 269 290 IPR018082 -
Cec05g2352 555 PRINTS Pollen allergen Amb family signature 371 390 IPR018082 -
Cec05g2352 555 PRINTS Pollen allergen Amb family signature 442 465 IPR018082 -
Cec05g2352 555 PRINTS Pollen allergen Amb family signature 145 162 IPR018082 -
Cec05g2352 555 PRINTS Pollen allergen Amb family signature 169 194 IPR018082 -
Cec05g2352 555 SMART amb_all 197 394 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1082 Cec-Chr4:30350018 Cec05g2352 Cec-Chr5:34761519 9.00E-181 dispersed
Cec05g2352 Cec-Chr5:34761519 Cec06g0796 Cec-Chr6:9552578 3.40E-155 dispersed
Cec04g0993 Cec-Chr4:29581621 Cec05g2352 Cec-Chr5:34761519 1.20E-42 transposed
Cec05g2352 Cec-Chr5:34761519 Cec08g0815 Cec-Chr8:19998474 1.70E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2352 K01728 - csv:101205739 933.71