Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2404 ATGGGGGTGCCTGCAACTGCAACTTTGGGGGATGATTTTCTGAGAGAAAGAGCGGCTAAGATGAGAGAATCACTGCAAAAGAGCCAAACTATTACTGATAACGTTGTCACCATTCTCGGTTCCTTTGACCACCGTCTTTCAGCTCTCGAAACCGCCATGCGCCCTACTCAGATCAGAACCAATTCTATTCGTAAAGCTCACGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCTATTGGTCAATTAAGAAACATTATCAAATTCTTTAGTGGCCATAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAGGCAAATACGCTGCTTGCAAAAGCCATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGCAAACCTGTGGAGCCTGAGCGTCTTTTCGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCATGATTCAGGTGCAAAGAATCACTCCTCAAATCCTCATTCTGCACATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCACTCTCATACCACCACGTGTTCTACCACTGCTGCATGATTTATCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAATCTACAGGGATACCCGTTCAGTCGTTCTGGAAGAAAGCCTACGAAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTATTTGCTGGTGAACGAAAAGTTTGCGATCAAATATTTGAAGGCTTCGAATCGCTTAGAGACCAATCATTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTTGGGGAGGCGATTGCAAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTTTGGACATGTATGAAATTATGCGAGAGCTTCACTCTGAGATAGAGACAATTTTTAAGGGTAAAGCATGCAATGAGATCAAGGAATCTGCATCGGGTTTGACCAAACGGCTTGCTCAGACAGCTAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAACTTTTTCAAGAATTTGAAGATAGTGGTCAAACGAATTCGGAATTGGCCACTGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGATGGAAAATCTAAGCATTACAGAGACCCTGCTTTGACTCACTTATTCCTCATGAACAACATTCACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGATCGTACAACAGCATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATTCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCTGGTATAGATGGAGGAAATAGTAGCGGAGTTTCTAAGGCGCTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCCGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTTGGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAGCCCGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAAGGGAAGAACTTGAGTGAACCTAAGCGATCATTACGAGCCCTCTTCGTCAATGTTTTTATAGATTTAGAAAATTTCATAGTGGATCAGAACGAGAATGAATTCGAAAATTCAGGACATACTCATCTTGGCTCCACTCTCTTTTGGGGAGGAGTTTTTACATCTCGAGAGGCCAAAAAAGATGACACGCTGCGCGCCATTGAAGACTACCAAAATGAAGTTGTGGACGCAAAGGCTACCGGCTTTGCTTCGCTGCCGAGAAAATTGGACCATTCTCGAAGAATCAAACTCGCTCCGGTAATCATCAACTTCTTTCTTCTTCGTCTCACTCATCTGCATATTTGTTTCATCATTCTCTTCTCTTTACTTTATCTGGAACAATCTGGAAATTCCTTCTATACTAGGCTTCCTTCCTTACTGTTCCTAGAAATGCCGGGAGATGGTGGAATCACTGCGGATCCAACCATCGAAGCCTGCAGCAAGGAGGCAAGCGACTCCAAATTCGCGAAGCGTTTTGCCGACGATATCATGCCTCACATCCTCAATCTGTATGGATCTTCTGCAACGCCTCGGGATTTTGAAATCTACGCTCCCGATGCTTCGTTCGAGGATCCATTAACGAGAGCTCACGGAGTGAAGGAAATCAAATCGGCATTTTATTCTTTGTCCAAGGTCTTTAGTGAATCAAGAATTGTGGAATACAATGTCAAAGAAAAACTTATTTCTCCTGGAAAACACGAGATTATAGTCGATAATAAGCAACACTACAAGTTTATGGGAAGAAACATAGATTTGGAATCACTCATCAAGTTGTATGTTGTTGAAGGAAAAATAGTTCGTCATGAGGACTGGTGGAATAAGAAACCACTTTTGAACAGAGAAACAGTCCAGTTACCAATGGTTGGTCGAATTTTAGAAATGACTCGCAGATGTACAATGTTAGCAACTCATGCAATGATGGGATTTGGAAAAGATTAA 2907 41.86 MGVPATATLGDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSGHKGFKSSEVVLNQANTLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGHDSGAKNHSSNPHSAHHDNSLETAVYTPPTLIPPRVLPLLHDLSQQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACNEIKESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTNSELATVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKRSLRALFVNVFIDLENFIVDQNENEFENSGHTHLGSTLFWGGVFTSREAKKDDTLRAIEDYQNEVVDAKATGFASLPRKLDHSRRIKLAPVIINFFLLRLTHLHICFIILFSLLYLEQSGNSFYTRLPSLLFLEMPGDGGITADPTIEACSKEASDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCTMLATHAMMGFGKD 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35320135 35332345 - CePI673135_05g024040.1 Cec05g2404 204207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2404 968 MobiDBLite consensus disorder prediction 173 201 - -
Cec05g2404 968 Pfam Exocyst complex component Exo70 N-terminal 73 155 - -
Cec05g2404 968 Gene3D Exocyst complex component Exo70 78 653 - -
Cec05g2404 968 SUPERFAMILY NTF2-like 818 934 IPR032710 -
Cec05g2404 968 FunFam Exocyst subunit Exo70 family protein 88 651 - -
Cec05g2404 968 MobiDBLite consensus disorder prediction 171 201 - -
Cec05g2404 968 SUPERFAMILY Cullin repeat-like 80 644 IPR016159 -
Cec05g2404 968 PANTHER EXOCYST COMPLEX PROTEIN EXO70 17 646 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cec05g2404 968 Pfam Exo70 exocyst complex subunit C-terminal 281 640 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cec05g2404 968 Coils Coil 703 723 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2404 K07195 - - csv:101206262 1225.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1189 Cec-Chr4:31470636 Cec05g2404 Cec-Chr5:35320135 2.10E-281 dispersed
Cec05g2404 Cec-Chr5:35320135 Cec07g1568 Cec-Chr7:31196133 8.10E-104 dispersed
Cec05g2404 Cec-Chr5:35320135 Cec03g0196 Cec-Chr3:2030574 6.50E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g774 . . . . . . . . . Cmo04g01515 . Cma18g00955 Car04g01504 Car18g00872 . . Cpe09g00367 . . . . . . . Cla05g02225 Cam05g2389 Cec05g2404 Cco05g2453 Clacu05g2379 Cmu05g2244 Cre05g2361 Cone1ag1422 Cone5ag0416 Cone11ag0966 . . . Chy10g01231 Cme10g00165 . . . . . . . Bma08g00906 . . . . . . . Cpe01g01290 . . . . . . . . . . . . . . . Lsi04g00159 Csa05g02705 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2404 . 12 653 EXO70 exocyst subunit family AT5G03540 76.6 9.9e-287 982.6
Cec04g1189 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 2.5e-266 914.8
Cec04g1189 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 1.1e-298 1022.3
Cec05g2404 . 14 653 EXO70 exocyst subunit family AT5G52340 75.2 4.1e-274 940.6
Cec04g1189 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.2e-176 615.9
Cec05g2404 . 149 653 EXO70 exocyst subunit family AT5G52350 60.3 2.8e-168 589.0
Cec03g0044 . 1 623 EXO70 exocyst subunit family AT5G58430 66.7 1.0e-245 846.3
Cec03g0044 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 7.8e-174 607.4
Cec07g1652 . 60 673 EXO70 exocyst subunit family AT5G13150 53.3 2.9e-174 609.0
Cec01g0878 . 111 722 EXO70 exocyst subunit family AT5G13990 54.5 1.0e-188 657.1
Cec07g1568 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.3e-216 749.6
Cec07g1568 . 9 607 EXO70 exocyst subunit family AT1G54090 61.8 3.9e-208 721.5
Cec07g1568 . 9 608 EXO70 exocyst subunit family AT3G14090 64.2 2.4e-218 755.4
Cec03g1406 . 27 664 EXO70 exocyst subunit family AT5G50380 61.7 1.1e-224 776.5
Cec03g0358 . 15 627 EXO70 exocyst subunit family AT5G50380 61.1 4.8e-212 734.6
Cec08g1297 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Cec10g2088 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.5e-178 622.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74