Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2426 ATGAACTCAGTTCCATTCATTTGCCTTCTCCTTATCTCTCTCCTTCTCGCCGGAGCTTCCGATTCTTCTCCGCCGTCTACCGCCCTCTGTAAATCCACTCTTTACCCTAAGCTCTGCCGCTCCATTCTCTCATCCATCCGGTTCTCCCCCTCCGATCCATACGGCTACGGGAAATTCTCCGTCAAGAAATGTCTCAAACAAGCGATCAAAATGTCTAGCGTAATCAGCGACTATCTCGACCGAGGACGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGAATGACTGCAGAGAACTTTCCGATTTGAATGTGGAGTTTCTTCGGTCGATCCAGGGCGTATTGGAGGCGGCGGAGGGCGTCGATGAGGAACTGGTGGAGCGCGTTGAGAGTATTCTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGTCGAGCGCCGGAGAGCTGTACAGTGTGTCATTGGGATTGGTTTCGAACTCGCTGTCGCGACGGTGGAAGAAGCGGCGGCAGAAGGGAAATGGAGATGGAGGGAATTTTCCGGCGGGTGCGCGGAGCAGAGAGCCATTGAACACGCTGATCAAGGGACTACATAAAATGGGATCATGCAACAACCAATCCACAAAGTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCAGCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAACTCAATGCCTCAAGATGGCTACTTTGTCATCTATGTTAGAGAAGGATACTATGAAGAATACGTCGTCATCCCCAAATTCAAAACCAACGTAATGCTCATCGGAGATGGCATTAATCGAACCATCATCACCGGGAACCATAGCGTCGTCGATGGTTGGACGACTTATAACTCTTCAACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTTGCAGTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAAGGATATCAAGACACTCTTTATGTTCATTCCCTAAGACAATTCTATAGAGAATGTGACATTTATGGCACTGTAGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCCAGAAAGCCACTCCCCAACCAAAAAAACGCCTTCACCGCGCAGGGCCGAACCGATCCAAACCAAAACACAGGCATCTCGATCCACAACTGCAGCATCAAGGCTGCACCCGACTGGGCGATGGATTGGAATGCGACGACGACGACGACGAACTACCTCGGGCGACCGTGGAAACAGTACTCAAGGACAGTGTATATGCAGTCTTATATTGGGGATTTGATAAGCCCAGTGGGATGGTTGGAATGGAATGGAACAGTAGGATTAGAGACATTGTATTATGGGGAGTTTGAGAATTATGGACCAGGAGCTAACACAAGCTTGAGGGTAAATTGGCCTGGATATAGCTTGATGAATCTTACACAAGCTATGAATTTTACTGTCTATAATTTCACTATGGGAGATACTTGGCTGCCTTATACTGATATACCTTTCTCTGGAGGTTTGTTAATTATGTGA 1707 48.1 MNSVPFICLLLISLLLAGASDSSPPSTALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVISDYLDRGRDSRLNQREAGALNDCRELSDLNVEFLRSIQGVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLSSAGELYSVSLGLVSNSLSRRWKKRRQKGNGDGGNFPAGARSREPLNTLIKGLHKMGSCNNQSTKCSGRKRLLTDLGSTGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVREGYYEEYVVIPKFKTNVMLIGDGINRTIITGNHSVVDGWTTYNSSTFTVCGDGFVAIDMTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCSIKAAPDWAMDWNATTTTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTVGLETLYYGEFENYGPGANTSLRVNWPGYSLMNLTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIM 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35492389 35498553 - CePI673135_05g024260.1 Cec05g2426 204229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2426 568 CDD PMEI-like_3 28 179 - -
Cec05g2426 568 FunFam Pectinesterase 244 565 - -
Cec05g2426 568 Gene3D - 244 565 IPR012334 -
Cec05g2426 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Cec05g2426 568 SUPERFAMILY Pectin lyase-like 245 564 IPR011050 -
Cec05g2426 568 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Cec05g2426 568 Pfam Pectinesterase 250 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec05g2426 568 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Cec05g2426 568 NCBIfam pectinesterase inhibitor domain 4 152 IPR006501 GO:0004857(InterPro)
Cec05g2426 568 PANTHER PECTINESTERASE 8 555 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec05g2426 568 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857(InterPro)
Cec05g2426 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2426 Cec-Chr5:35492389 Cec09g0544 Cec-Chr9:4669231 5.20E-151 dispersed
Cec01g0644 Cec-Chr1:6986460 Cec05g2426 Cec-Chr5:35492389 1.40E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2426 K01051 - csv:101206112 1032.71