Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2427 ATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATCTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAAGCAAGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTCGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAGTATAGAGGAGCTAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAACCATCAGTTCCTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAGCAACAGCAACAGGATCAGCAACAACAACAACAAACGACATTTGCAGGCCCGCCCGACCTTCAGTTCTCGATCGAGAACAACCCGGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCGCTCGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1275 47.76 MRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGKQGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKPSVPQAAEQAEDPNYSPASSEGEVVQQQQQDQQQQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35504013 35508026 - CePI673135_05g024270.1 Cec05g2427 204230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2427 424 FunFam AP2-like ethylene-responsive transcription factor 83 149 - -
Cec05g2427 424 Pfam AP2 domain 182 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Cec05g2427 424 MobiDBLite consensus disorder prediction 1 70 - -
Cec05g2427 424 CDD AP2 182 243 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 ProSiteProfiles AP2/ERF domain profile. 183 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 CDD AP2 84 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 SUPERFAMILY DNA-binding domain 83 149 IPR016177 GO:0003677(InterPro)
Cec05g2427 424 Gene3D AP2/ERF domain 84 149 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 Gene3D AP2/ERF domain 182 243 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 PRINTS Ethylene responsive element binding protein signature 223 243 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 SMART rav1_2 183 247 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 SMART rav1_2 84 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 ProSiteProfiles AP2/ERF domain profile. 84 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2427 424 MobiDBLite consensus disorder prediction 254 300 - -
Cec05g2427 424 SUPERFAMILY DNA-binding domain 182 243 IPR016177 GO:0003677(InterPro)
Cec05g2427 424 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 297 - -
Cec05g2427 424 MobiDBLite consensus disorder prediction 264 298 - -
Cec05g2427 424 FunFam AP2-like ethylene-responsive transcription factor 182 243 - -
Cec05g2427 424 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2427 Cec-Chr5:35504013 Cec10g1500 Cec-Chr10:29363872 1.00E-74 dispersed
Cec06g1453 Cec-Chr6:28022843 Cec05g2427 Cec-Chr5:35504013 6.50E-75 transposed
Cec09g0344 Cec-Chr9:2893611 Cec05g2427 Cec-Chr5:35504013 3.90E-75 transposed
Cec10g1594 Cec-Chr10:30322942 Cec05g2427 Cec-Chr5:35504013 1.90E-52 transposed
Cec05g2427 Cec-Chr5:35504013 Cec08g0914 Cec-Chr8:20976427 4.70E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29651 PF00847 AP2 5.30E-09 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2427 - - - 0.0