Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2476 ATGGCTTCCAGAGAAGGGAGACGCCATCATCATCATCACCATCATCAGAATCTGGTGCCGCTTGCTGCTTTGATCAGTAAAGAGGTGAGGAGTGAGAGATTGGAGAAACCAACCATAAGATATGGGAATGCAGCGCAGTCTAGAAAGGGGGAAGATTATTTTCTCATGAAAACTGATTGTCAGCGAGTTCCCGGGAACCCTGCATCCACTTTCTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTACACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATTGATGGATGGACGGTGACAGTAGCGTCAGTTGGAGATTCCCGTTGCATTTTGGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATCGTTGGTGGTGCTGAGATCGGTCCACTCCGTTGTTGGCCCGGAGGCTTATGCCTTTCTCGATCCATTGGAGATATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTTGTGAAACAAGTAAAGTTATCAAAGGCAGGCGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGATGCTTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGGTTGAAAGATGATACAACCTGCATAGTTGTTGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTTTCAGCTATCGGTTTCGTGGAAGAATTATTCGAAGACGGCTCCGCCATGCTGGCGGAAAGGCTTGGAACAGTAGAGTTGAGTGGATCTGGACATGGCACGCCCAGCCTGTTCACTTGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGTCCCAGCGGGGGTACTTTGGATCTTTATTTGGAGGTTGTTAATCAAGTGGTTGATATTCGAAATCTCATGAACTCTTTCCGTTCGGTAACTTTTCAGCATGTTCCTAGGTACCATAATCAGGCCGCACATTCTTTGGCCTGTGAAGGGTTGTTGGGATTGAACCAGCTAAGGCTCAACTCTTTCCCATCTGATTTAGAGGGATTGTTGAGATCTGATCTTTTCTTTTTATGTAATCCTGTTGCTTTGTATTATGCCTTGTCGTGGTTTGTGTAA 1554 46.2 MASREGRRHHHHHHHQNLVPLAALISKEVRSERLEKPTIRYGNAAQSRKGEDYFLMKTDCQRVPGNPASTFSVFAIFDGHNGNAAAIYTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSKAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGGTLDLYLEVVNQVVDIRNLMNSFRSVTFQHVPRYHNQAAHSLACEGLLGLNQLRLNSFPSDLEGLLRSDLFFLCNPVALYYALSWFV 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35844511 35850381 + CePI673135_05g024760.1 Cec05g2476 204279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2476 517 PANTHER PROTEIN PHOSPHATASE 41 301 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec05g2476 517 FunFam probable protein phosphatase 2C 5 40 307 - -
Cec05g2476 517 Pfam Reverse transcriptase-like 441 473 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Cec05g2476 517 ProSiteProfiles PPM-type phosphatase domain profile. 33 302 IPR001932 -
Cec05g2476 517 CDD PP2Cc 49 302 IPR001932 -
Cec05g2476 517 Gene3D - 41 309 IPR036457 -
Cec05g2476 517 SMART PP2C_SIG_2 56 302 IPR001932 -
Cec05g2476 517 SMART PP2C_4 30 300 IPR001932 -
Cec05g2476 517 Pfam Protein phosphatase 2C 66 287 IPR001932 -
Cec05g2476 517 SUPERFAMILY PP2C-like 46 302 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1817 Cec-Chr3:36411574 Cec05g2476 Cec-Chr5:35844511 6.40E-164 dispersed
Cec05g2194 Cec-Chr5:33516662 Cec05g2476 Cec-Chr5:35844511 2.30E-143 dispersed
Cec05g2476 Cec-Chr5:35844511 Cec06g0667 Cec-Chr6:7518188 1.20E-21 dispersed
Cec05g2476 Cec-Chr5:35844511 Cec05g0661 Cec-Chr5:5357613 1.20E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2476 - - - 0.0