Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2493 ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTGCTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAAATAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAACTGGAATTGACTCTTAAATCGGCTCAGTAA 615 54.15 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPEIGIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35976194 35977825 + CePI673135_05g024930.1 Cec05g2493 204296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2493 204 MobiDBLite consensus disorder prediction 151 186 - -
Cec05g2493 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 162 - GO:0010468(PANTHER)
Cec05g2493 204 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cec05g2493 204 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1339 Cec-Chr5:14256246 Cec05g2493 Cec-Chr5:35976194 1.00E-52 dispersed
Cec05g2272 Cec-Chr5:34078014 Cec05g2493 Cec-Chr5:35976194 8.90E-37 dispersed
Cec05g2493 Cec-Chr5:35976194 Cec06g1686 Cec-Chr6:30440467 5.20E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29654 PF03195 LOB 5.90E-23 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2493 - - - 0.0