Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2503 ATGAAGATTTTTGTCAAGACTCTCAAGGGCTCGCACTTCGAAATCGAAGTTCAGCCTGCAGATACGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCACAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGATAGCACAACACTGGAGGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTCCATCGGGTGGGACATCTTCTACCACACAAGCTGCGCCGGTATCGAAGGCACCACAGAGCACTGCCCCTGCTCATGCTGCCACTCCAGTGTCAACTTCTGAAGTTCCTCTACCAACTTCAGCACCGCCTGCTAATGTTACTGATTCTTCTCCTCCTGCTCCCGCGCCGGCTCCTGCTCCTGCTCCCGCTCCCGCTCCCGCTGCAGCCCCAGCAGCCACTGTTTTGCCAGAATCGGATGTCTACAGCCAAGCAGCCTCTAACCTGGTTGCTGGTAGTAACTTGGAGGAGACTATCCAACAGATTCTTGACATGGGCGAAGGCGTTTGGGATAGGGACACTGTTGTTCGAGCTCTTCGTGCTGCTTACAATAATCCGGAAAGGGCTGTTGATTACCTTTATTCTGGAATACCTGAACAAGTTGAAGCCCCACCTGCTCGAGTTCCGTCAACTGTGCAAGCAACCAACCCTTCTGCTCAACCTGCACAGCCAGCCCAACCTGCATCTGTGCCATCAACTGGCCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTGCCTAACATAGCTTCTGGAGCTGCTGGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCAATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGGCTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCCCTTGAAGGAGAAGGGAATATACTTGGGCAGCTTGCTGAGGCTATGCCACAGGCTATAACTGTAACCCCAGAGGAGCGGGAAGCCATTCAACGGCTTGAGGATATGGGTTTCGACAGAGGTCTAGTTGTGGAGGTTTTCTTCGCGTGCAACAAAAACGAAGAAATGGCTGCCAACTACCTTTTAGATCATATTCACGAATTTGAGGCGATGTACCCTTGGGCTAAAGGATCAAACAGGCATATGGTGCTCTTTTGTGGTTGA 1260 48.57 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSTTLEENKVAENSFIVIMLTKNKSPSGGTSSTTQAAPVSKAPQSTAPAHAATPVSTSEVPLPTSAPPANVTDSSPPAPAPAPAPAPAPAPAAAPAATVLPESDVYSQAASNLVAGSNLEETIQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPPARVPSTVQATNPSAQPAQPAQPASVPSTGPNANPLDLFPQGVPNIASGAAGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDMGFDRGLVVEVFFACNKNEEMAANYLLDHIHEFEAMYPWAKGSNRHMVLFCG 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36078446 36086775 + CePI673135_05g025030.1 Cec05g2503 204306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2503 419 CDD Ubl_Rad23 1 74 - -
Cec05g2503 419 FunFam UV excision repair protein RAD23 1 80 - -
Cec05g2503 419 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515(InterPro)
Cec05g2503 419 SUPERFAMILY XPC-binding domain 274 339 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cec05g2503 419 Pfam UBA/TS-N domain 358 393 IPR015940 -
Cec05g2503 419 Pfam UBA/TS-N domain 174 211 IPR015940 -
Cec05g2503 419 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 355 396 IPR015940 -
Cec05g2503 419 CDD UBA1_Rad23_plant 167 216 - -
Cec05g2503 419 FunFam UV excision repair protein RAD23 homolog 349 397 - -
Cec05g2503 419 Gene3D - 350 397 - -
Cec05g2503 419 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515(InterPro)
Cec05g2503 419 MobiDBLite consensus disorder prediction 77 123 - -
Cec05g2503 419 NCBIfam UV excision repair protein Rad23 1 401 IPR004806 GO:0006289(InterPro)
Cec05g2503 419 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 171 214 IPR015940 -
Cec05g2503 419 SMART uba_6 173 213 IPR015940 -
Cec05g2503 419 SMART uba_6 358 395 IPR015940 -
Cec05g2503 419 MobiDBLite consensus disorder prediction 124 148 - -
Cec05g2503 419 FunFam UV excision repair protein RAD23 homolog 166 216 - -
Cec05g2503 419 Pfam XPC-binding domain 278 333 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cec05g2503 419 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Cec05g2503 419 MobiDBLite consensus disorder prediction 77 149 - -
Cec05g2503 419 SUPERFAMILY UBA-like 338 400 IPR009060 GO:0005515(InterPro)
Cec05g2503 419 Gene3D - 1 80 - -
Cec05g2503 419 Gene3D - 166 216 - -
Cec05g2503 419 Gene3D - 268 333 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cec05g2503 419 SMART ubq_7 1 75 IPR000626 GO:0005515(InterPro)
Cec05g2503 419 MobiDBLite consensus disorder prediction 227 257 - -
Cec05g2503 419 FunFam UV excision repair protein RAD23 B 269 334 - -
Cec05g2503 419 SUPERFAMILY UBA-like 158 217 IPR009060 GO:0005515(InterPro)
Cec05g2503 419 SMART CBM 276 319 IPR006636 -
Cec05g2503 419 MobiDBLite consensus disorder prediction 224 259 - -
Cec05g2503 419 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 394 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Cec05g2503 419 PRINTS DNA repair protein Rad23 signature 352 368 IPR004806 GO:0006289(InterPro)
Cec05g2503 419 PRINTS DNA repair protein Rad23 signature 304 326 IPR004806 GO:0006289(InterPro)
Cec05g2503 419 PRINTS DNA repair protein Rad23 signature 384 399 IPR004806 GO:0006289(InterPro)
Cec05g2503 419 PRINTS DNA repair protein Rad23 signature 369 383 IPR004806 GO:0006289(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2503 K10839 - - csv:101220491 678.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2503 Cec-Chr5:36078446 Cec10g1482 Cec-Chr10:29210987 7.50E-107 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41