Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2524 ATGGATTTCCTTCATAATTTTCTGGATATTCGAGTAGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTTTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCTATTGAATCTTGCCGGCAACAGTTATCTGGAGTGTCGACAGAGAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAATTTATTCCGATTAACAAACCTTCTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGAGAAAATTGAATTGGGTCGATCGGATTGGCTTAAATCGGCTCAACTTTGGAATCAGTCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCATCGGTTATTGAGGTCAAAAAGAATGTCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAACTCCATTGAAAACAGAGTCAGTGGTGGTCGGTAAATCGGACGGTTCTTCGCCAATTCCGGAGGCGACGACGAGTTCGACGGTGGAAACCGCCTCCAAAGGTGGCGGTGGAACCAGTAAACGAGAAGATAAGGAGTCCCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCACGTTGCTACACCAAAACAAATCCGAGAGTTAATGAAGGTCGATGGACTCACTAACGACGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACATCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTAGTGGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGGCGACGACAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCGACGGGGGTGCGACGGCAGACGACGGCAGAGGAAGGGAAGGCGAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGGCGTAA 1074 50.47 MDFLHNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIESCRQQLSGVSTESSEHTSSDGPVLEEFIPINKPSVNSHFEIEEDEQSKPEKIELGRSDWLKSAQLWNQSPDPPVTEDVAKETTSSVIEVKKNVGGGAFQPFQKEKTTPLKTESVVVGKSDGSSPIPEATTSSTVETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDIGSSSAPQQFVVVGSIWVPPPPPPKYTVATTAKARNGIYAPVATGVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36250793 36252244 - CePI673135_05g025240.1 Cec05g2524 204327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2524 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 325 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2524 357 MobiDBLite consensus disorder prediction 319 357 - -
Cec05g2524 357 MobiDBLite consensus disorder prediction 191 211 - -
Cec05g2524 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cec05g2524 357 MobiDBLite consensus disorder prediction 159 211 - -
Cec05g2524 357 FunFam Myb family transcription factor 205 263 - -
Cec05g2524 357 MobiDBLite consensus disorder prediction 159 189 - -
Cec05g2524 357 MobiDBLite consensus disorder prediction 333 357 - -
Cec05g2524 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677(InterPro)
Cec05g2524 357 Coils Coil 16 36 - -
Cec05g2524 357 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Cec05g2524 357 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cec05g2524 357 Gene3D - 205 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2524 Cec-Chr5:36250793 Cec11g0279 Cec-Chr11:3051600 1.10E-45 dispersed
Cec05g2524 Cec-Chr5:36250793 Cec08g0536 Cec-Chr8:15915237 6.10E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29657 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2524 - - - 0.0