Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2525 ATGGACGGTATTTGCATTGACGAAAGCACTTCCACTGAATCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGGAGTGGCGTCACCAGTGTAGTTCTCGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGAAGACGACGCGGTTTCTGCCTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGCTTGGGATCGGAAACGAAACCGATCGTTATCCGGGTTAGATACTGACCCGGAAACCGCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTACTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTACAACCGGGTCCGACATGAACCCGGTTCAGACCGTTAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCACATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGAGCAATGTAA 1047 50.72 MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEEDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSAWDRKRNRSLSGLDTDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTTTGSDMNPVQTVRLFGVDIIKVSPHSGCSEKRRRELEFLASQCTKKQRIVGAM 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36260130 36261176 - CePI673135_05g025250.1 Cec05g2525 204328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2525 348 SMART rav1_2 60 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2525 348 Gene3D - 176 302 IPR015300 -
Cec05g2525 348 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2525 348 FunFam AP2 domain-containing protein RAP2.8 59 116 - -
Cec05g2525 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 314 IPR044800 GO:0003700(InterPro)
Cec05g2525 348 Pfam AP2 domain 59 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2525 348 SUPERFAMILY DNA-binding pseudobarrel domain 185 279 IPR015300 -
Cec05g2525 348 CDD AP2 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2525 348 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677(InterPro)
Cec05g2525 348 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677(InterPro)
Cec05g2525 348 MobiDBLite consensus disorder prediction 7 22 - -
Cec05g2525 348 ProSiteProfiles B3 DNA-binding domain profile. 187 292 IPR003340 GO:0003677(InterPro)
Cec05g2525 348 CDD B3_DNA 186 274 IPR003340 GO:0003677(InterPro)
Cec05g2525 348 MobiDBLite consensus disorder prediction 1 30 - -
Cec05g2525 348 SMART B3_2 187 292 IPR003340 GO:0003677(InterPro)
Cec05g2525 348 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0984 Cec-Chr3:17396500 Cec05g2525 Cec-Chr5:36260130 7.70E-104 dispersed
Cec03g1432 Cec-Chr3:32008120 Cec05g2525 Cec-Chr5:36260130 1.00E-43 dispersed
Cec05g2525 Cec-Chr5:36260130 Cec06g0239 Cec-Chr6:2554739 2.30E-40 dispersed
Cec05g2525 Cec-Chr5:36260130 Cec01g0127 Cec-Chr1:1163092 3.00E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29658 PF02362 B3 1.20E-27 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2525 K09287 - csv:101203784 626.32