Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2529 ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCAACAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAATAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATTGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCACCACCGCCACCACCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTAACCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCATCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAGCTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAAGAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA 1089 41.14 MCGEDQEEDHHQQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQEQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36319422 36321768 - CePI673135_05g025290.1 Cec05g2529 204332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2529 362 Pfam Helix-loop-helix DNA-binding domain 177 224 IPR011598 GO:0046983(InterPro)
Cec05g2529 362 CDD bHLH_AtAIG1_like 169 246 - -
Cec05g2529 362 Gene3D - 169 230 IPR036638 GO:0046983(InterPro)
Cec05g2529 362 MobiDBLite consensus disorder prediction 341 362 - -
Cec05g2529 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 229 IPR036638 GO:0046983(InterPro)
Cec05g2529 362 SMART finulus 180 229 IPR011598 GO:0046983(InterPro)
Cec05g2529 362 PANTHER TRANSCRIPTION FACTOR BHLH30 149 355 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2529 362 FunFam transcription factor bHLH30 169 232 - -
Cec05g2529 362 MobiDBLite consensus disorder prediction 348 362 - -
Cec05g2529 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1872 Cec-Chr2:36537359 Cec05g2529 Cec-Chr5:36319422 3.10E-31 dispersed
Cec04g1537 Cec-Chr4:34880378 Cec05g2529 Cec-Chr5:36319422 8.40E-16 dispersed
Cec05g2529 Cec-Chr5:36319422 Cec06g1087 Cec-Chr6:20016543 6.80E-72 dispersed
Cec05g2529 Cec-Chr5:36319422 Cec03g0632 Cec-Chr3:6773526 1.20E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29660 PF00010 HLH 5.70E-13 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2529 - - - 0.0