Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2529 | ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCAACAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAATAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATTGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCACCACCGCCACCACCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTAACCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCATCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAGCTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAAGAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA | 1089 | 41.14 | MCGEDQEEDHHQQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQEQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 36319422 | 36321768 | - | CePI673135_05g025290.1 | Cec05g2529 | 204332 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2529 | 362 | Pfam | Helix-loop-helix DNA-binding domain | 177 | 224 | IPR011598 | GO:0046983(InterPro) | |
Cec05g2529 | 362 | CDD | bHLH_AtAIG1_like | 169 | 246 | - | - | |
Cec05g2529 | 362 | Gene3D | - | 169 | 230 | IPR036638 | GO:0046983(InterPro) | |
Cec05g2529 | 362 | MobiDBLite | consensus disorder prediction | 341 | 362 | - | - | |
Cec05g2529 | 362 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 178 | 229 | IPR036638 | GO:0046983(InterPro) | |
Cec05g2529 | 362 | SMART | finulus | 180 | 229 | IPR011598 | GO:0046983(InterPro) | |
Cec05g2529 | 362 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 149 | 355 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2529 | 362 | FunFam | transcription factor bHLH30 | 169 | 232 | - | - | |
Cec05g2529 | 362 | MobiDBLite | consensus disorder prediction | 348 | 362 | - | - | |
Cec05g2529 | 362 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 174 | 223 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g1872 | Cec-Chr2:36537359 | Cec05g2529 | Cec-Chr5:36319422 | 3.10E-31 | dispersed | |
Cec04g1537 | Cec-Chr4:34880378 | Cec05g2529 | Cec-Chr5:36319422 | 8.40E-16 | dispersed | |
Cec05g2529 | Cec-Chr5:36319422 | Cec06g1087 | Cec-Chr6:20016543 | 6.80E-72 | dispersed | |
Cec05g2529 | Cec-Chr5:36319422 | Cec03g0632 | Cec-Chr3:6773526 | 1.20E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29660 | PF00010 | HLH | 5.70E-13 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2529 | - | - | - | 0.0 |