Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2535 ATGGCTTCCGAGAGCGGTTCCAGATCCAGTTCAGCGGCCGATTCTTATATTGGAAGCTTGATAAGCTTAACTTCCAAGAGTGAGATTAGATACGAAGGTGTTCTTTACAACATCAACACCGAAGAGTCCAGTATCGGACTGAGAAATGTACGGTCATTTGGAACAGAAGGGAGAAAGAAGGATGGACCACAAGTCCCACCAAGCGACAAAGTTTTTGAATACATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAAGTAAAATCTTCTCCTCCTGTTCAGACTACATCCTTGATAAATAATGATCCAGCTATTATTCAGTCTCACTATCCTTGTCCAGCATCGACTTCTTCAAGCTTGCCTCCTCCTGTTAGTGGGCCTTTGCCTGATATTAATTCTCAGGCCATGCCTATGGGAATTCCTGGATCTAATTTCCAGGGTGGGTTGCCTTTATATCAAGCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCTCCTACGCCATCTCCCCCAAATCCAAGTGGTGGTGGGCTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGCCCCCCTAATGGACTTCCTCATATGCAACAGCAGTCATTACTTCGTCCACCACCTGGCCTGTCATTGCCTTCTTCCTTGCAGCAGCCCCTGCAATATCCTAATCTTAATACTTCTTTACCCACTGGGGCACCAAATTTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCGAGCACTCCTAGTTTATCGTCCACAGCAATGCCACCAGTAACTGTATCTTCGTCACTCCCATCTGTGCTTTCGGCTCCACAGACCTCTGAGATATCATCAAGCTCAGTGGTCAACAAGACAGTAAATTCTGCTCTTCCTCAAGCTCCTCTAAGTACTAATTTGCCATCGCTCTCTCCTTTGACGGCAAGTTCAGATGTCAGTCCTGTTGTGCCTCCAACTATTAACAAAACTACTACAGTTTCTGGTCCAGCATTGTCTTACCAAACTGTCTCTCAATCTACATCCTCTGTTGTTGGAACATTGAACTCTGCTCTCACAGGTGCACCTGTACCTACCCTTGTGACTCCAGGACAGCTGTTGCAAACTACTGTAGCCTCTTCATCTTTGGAAACAGTTCAAAAGGACGTTGAGGTGGTTCAAACATCTTCCTCCTTAGCAGCCGAACAAACTGTTCCAGCAGCCGATACTCAGCCACCATTATTACCATTACCGGTGTCTTCACAAGCTATTCATAAGCCAAATGGTTCAACTTTGCAAACTCGGTACATCCACAGGGGACGTGGTAGAGGAAGACGATTTGGGAACTCGCATCAAACAGAAAGATTTACAGAAGATTTTGACTTCACGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCATCCAAAGTACAATGATGGGGACGAAAAGTTCAGTGATGAAGATGATGTCTATGAGGAAGATGATGGTGAATCTTCAAAGTTGGAGATCAAGCCTGTGTACAATAAGGACGACTTTTTTGATACACTCTCGTGCAACAATCCTGACAATGAAGCTCAACATGGAAGGAGGACCAGATACTACGAACAAATCAAGTTGGACACTGAGACATTTGGTGAATTTGCAAGATTCCGAGGTGGTCGTGGTGGGTTTTCTTCTGGACGTGGTGGCCGTCGTGGTGGTTATTACGGGAGAGGATACGGCCATGTTGGAAGGGGTCGAGGGCGGGGAATGCATAACTATAATCTCCTACTTACCACTGTACTCTTGGCCGAGCCAAGATTGTTGAGCTGCAGACCGCCTTTCTCTGTCCCCATGGCCGCGGCATTGCCCTCACTCACCCCATTACTTATCTTTGCCAGAATCTTTGGTCTGCTTGTTGCCGTTCTGGCCTTCGTTTGGGCTTTTGCATTCAGTTCCAGCTTCGGCCATCGCTCCCCTGCCCGCGATGACCATCTCTTCGACGTTCTGCATCCTTTGTTCATGGTAATTGGTCTCATTCTCCTCAGCGGGGAAGCAATTTTGGTCCATAGCTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTGAGTCTTCAAGGGCTGGCTTTAGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGGCTTTTTGGCTAATTTCCACAGTTTACATTCTTGGATGGGTTTGATTGTTGTCACTTTGTTCGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACAGGGCTTCTTGAGAAGTTGACATTGTTGCAAACCAAGAGAAATGTTCCTAGGAAGGGTCCTGAAGCCACGTTTGTAAACAGTCTAGGCTTGGCACTGGCTTTGCTAACTGGAACTGTTATGCTCACTGCTATATCTCCTAAATATCCTCCTTCCCTCCCCACCACCAAACAACAACCATTTTTCTCTAATTCAAAGCCCTTACCTTCTTAA 2577 46.1 MASESGSRSSSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQTTSLINNDPAIIQSHYPCPASTSSSLPPPVSGPLPDINSQAMPMGIPGSNFQGGLPLYQAGGNVGSWGASPTPSPPNPSGGGLALPMYWQGYYGPPNGLPHMQQQSLLRPPPGLSLPSSLQQPLQYPNLNTSLPTGAPNLLEVPSSLFSANPSTPSLSSTAMPPVTVSSSLPSVLSAPQTSEISSSSVVNKTVNSALPQAPLSTNLPSLSPLTASSDVSPVVPPTINKTTTVSGPALSYQTVSQSTSSVVGTLNSALTGAPVPTLVTPGQLLQTTVASSSLETVQKDVEVVQTSSSLAAEQTVPAADTQPPLLPLPVSSQAIHKPNGSTLQTRYIHRGRGRGRRFGNSHQTERFTEDFDFTAMNEKFNKDEVWGHLGKNTKSHPKYNDGDEKFSDEDDVYEEDDGESSKLEIKPVYNKDDFFDTLSCNNPDNEAQHGRRTRYYEQIKLDTETFGEFARFRGGRGGFSSGRGGRRGGYYGRGYGHVGRGRGRGMHNYNLLLTTVLLAEPRLLSCRPPFSVPMAAALPSLTPLLIFARIFGLLVAVLAFVWAFAFSSSFGHRSPARDDHLFDVLHPLFMVIGLILLSGEAILVHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRGFLANFHSLHSWMGLIVVTLFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVVTAETGLLEKLTLLQTKRNVPRKGPEATFVNSLGLALALLTGTVMLTAISPKYPPSLPTTKQQPFFSNSKPLPS 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36360908 36369286 - CePI673135_05g025350.1 Cec05g2535 204338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2535 858 ProSiteProfiles Cytochrome b561 domain profile. 628 833 IPR006593 -
Cec05g2535 858 MobiDBLite consensus disorder prediction 468 486 - -
Cec05g2535 858 SMART 561_7 666 791 IPR006593 -
Cec05g2535 858 Pfam Eukaryotic cytochrome b561 666 796 IPR006593 -
Cec05g2535 858 CDD LSm14_N 16 87 IPR025609 -
Cec05g2535 858 PANTHER SCD6 PROTEIN-RELATED 13 586 - GO:0000932(PANTHER)|GO:0003729(PANTHER)|GO:0033962(PANTHER)|GO:0034063(PANTHER)
Cec05g2535 858 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723(InterPro)
Cec05g2535 858 Pfam FDF domain 447 550 IPR019050 -
Cec05g2535 858 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Cec05g2535 858 CDD Cyt_b561_ACYB-1_like 660 799 - -
Cec05g2535 858 Gene3D - 6 92 - -
Cec05g2535 858 SMART FDF_2 446 551 IPR019050 -
Cec05g2535 858 MobiDBLite consensus disorder prediction 468 502 - -
Cec05g2535 858 ProSiteProfiles TFG box profile. 531 551 IPR025768 -
Cec05g2535 858 FunFam Trailer hitch, isoform C 10 92 - -
Cec05g2535 858 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Cec05g2535 858 ProSiteProfiles DFDF domain profile. 440 476 IPR025762 -
Cec05g2535 858 ProSiteProfiles FFD box profile. 508 523 IPR025761 -
Cec05g2535 858 FunFam Cytochrome b reductase 1 619 840 - -
Cec05g2535 858 Gene3D - 616 838 - -
Cec05g2535 858 SMART LSM14_2 10 110 IPR025609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0728 Cec-Chr7:14361103 Cec05g2535 Cec-Chr5:36360908 5.10E-22 transposed
Cec09g1347 Cec-Chr9:16962880 Cec05g2535 Cec-Chr5:36360908 1.10E-27 transposed
Cec11g0556 Cec-Chr11:6087148 Cec05g2535 Cec-Chr5:36360908 3.80E-44 transposed
Cec01g0577 Cec-Chr1:6054412 Cec05g2535 Cec-Chr5:36360908 8.90E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2535 K18749 - csv:101205721 893.649