Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2540 ATGTCCAAATCCCTCCATGACTCTTCCTTCTCTTTCTCCAGGCGCTACTTCAACTGGAAAAACAAGTTTCACGATTCCAAACATCAACAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACCACAACAACAACATCAACAAATCTTATCTTTCAGTTTATCCTCCCGTTTCAGTGAAGACGACAGAGAACACGACCTCAAAACCAAAATCCAAAACAAACCTTCATCCTCATCCTCATCCAACCGTCCGGTTTCCAAGCTCCGAACCGCTCTAACAATCTTCACCCGGATCCGACACACTCCCCGCCGCTCCCGCCTCGGCGGTCGTGTCATCGGTACACTATTCGGCTACCGACGAGGCCACGTCTATTTCGCATTACAAGAAGACACAAAACAGAGTCCAACGTTTTTAATCGAGCTCTCCACGCCGACCAGCGTTCTGGTTCGAGAAATGGCATCTGGGTTAGTCCGGATCGCGCTGGAATGCGAGAAGAAAACAGAGAGGAAGAAAAATTGCAAGCTAGTGGAAGAACCACTTTGGAGAACGTATTGTAATGGGAAGAAATGTGGGTATGGTAGTAGAAGAGAATGTGGGGCAGAGGAGAAGAAGATTCTGAAGGCAGTGGAGCCGATCACGATGGGGGCTGGGGTTTTGCCGCCGGGGAATGGGTCCGACGGGGAATTAATGTACATGAGAGCCAGGTTCGAGCGGGTGATTGGATCGAAGGATTCAGAAGCTTATTACATGATGAGCCCAGATTGTAATGGAGGGCCTGAACTCAGCATTTACTTGCTTAGGGTGTAA 825 48.12 MSKSLHDSSFSFSRRYFNWKNKFHDSKHQQDEEEEEEEEEEEEEEEQPQQQHQQILSFSLSSRFSEDDREHDLKTKIQNKPSSSSSSNRPVSKLRTALTIFTRIRHTPRRSRLGGRVIGTLFGYRRGHVYFALQEDTKQSPTFLIELSTPTSVLVREMASGLVRIALECEKKTERKKNCKLVEEPLWRTYCNGKKCGYGSRRECGAEEKKILKAVEPITMGAGVLPPGNGSDGELMYMRARFERVIGSKDSEAYYMMSPDCNGGPELSIYLLRV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36398198 36399022 - CePI673135_05g025400.1 Cec05g2540 204343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2540 274 MobiDBLite consensus disorder prediction 31 47 - -
Cec05g2540 274 Coils Coil 21 53 - -
Cec05g2540 274 MobiDBLite consensus disorder prediction 23 91 - -
Cec05g2540 274 MobiDBLite consensus disorder prediction 63 77 - -
Cec05g2540 274 NCBIfam uncharacterized plant-specific domain TIGR01570 117 274 IPR006460 GO:0010274(InterPro)
Cec05g2540 274 Pfam Protein of unknown function, DUF617 117 273 IPR006460 GO:0010274(InterPro)
Cec05g2540 274 PANTHER PROTEIN MIZU-KUSSEI 1 49 274 IPR006460 GO:0010274(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2540 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0465 Cec-Chr4:18481508 Cec05g2540 Cec-Chr5:36398198 1.10E-48 dispersed
Cec02g1415 Cec-Chr2:31349411 Cec05g2540 Cec-Chr5:36398198 1.10E-50 transposed
Cec04g0911 Cec-Chr4:28866367 Cec05g2540 Cec-Chr5:36398198 6.70E-34 transposed
Cec05g2174 Cec-Chr5:33327569 Cec05g2540 Cec-Chr5:36398198 1.10E-38 transposed
Cec11g1367 Cec-Chr11:27945910 Cec05g2540 Cec-Chr5:36398198 3.20E-43 transposed
Cec01g1682 Cec-Chr1:31448015 Cec05g2540 Cec-Chr5:36398198 1.30E-62 wgd
Cec01g0580 Cec-Chr1:6100959 Cec05g2540 Cec-Chr5:36398198 1.00E-52 wgd
Cec05g2540 Cec-Chr5:36398198 Cec06g1710 Cec-Chr6:30678135 8.20E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g244 . Blo16g01046 . Bda11g01125 Bpe13g01322 . Bma14g01690 . Cmo04g01617 Cmo18g01075 . Cma18g01053 Car04g01596 . Sed14g0510 Cpe09g00264 Cpe01g01753 Bhi07g01383 Tan04g0913 Cmetu10g1393 Lac13g0446 Hepe10g1858 . . Cla05g02341 Cam05g2514 Cec05g2540 Cco05g2581 Clacu05g2508 Cmu05g2370 Cre05g2487 Cone13ag0866 Cone19ag0866 Cone6ag0479 Cone9ag0491 Lsi04g00301 Csa05g02071 Chy10g01106 Cme10g00304 . Blo11g00825 Bda07g01520 Bda11g01125 Bpe11g01682 . . Bma06g00777 . . . . . . . . . Bhi12g00826 . . . . . . Cla01g00565 Cam01g0588 Cec01g0580 Cco01g0604 Clacu01g0583 Cmu01g0554 Cre09g1953 Lsi09g00613 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000518 5 3 5 6 5 3 4 3 3 3 3 3 6 3 3 6 3 4 6 2 3 3 3 4 3 3 3 6 3 2 112