Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2548 ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCCACTCCATCTCCGCCGCCTCCGGTCGCATCTAATTCCCCACCTAGTACTCCGACACTGTCGCCGCCGCAACAATCGCCTCCTCCGAATCCGTCTGACTCCGCGACTCCCACTTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTGCTACACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCGGCGTCGGATGGTTCCGCCGGCAACTCCACCATCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCACCACCATCAGCAACCCCACCAGTAAGCTCCACTCCACCAACGCCATCTAATCCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCACAATCATCAAAACCACCTGAAAACCCCCCTCCGCTGCGGCCGCCACCACCACAAGCAAACCCGCCGGATAATCCAGCGCCGCCGCCACAGCCCACAAACCCACCTGGGAATTCACCTCCTACGCCACCATCAGCACTGCCTCCAGCTACCTCACCTCCTTCCCCAGCATCCATACCTCCAAGAAATTCACCTCCACCCCCAAGGCTTACTCCTCCTCCCGGTGAGCCCTCACTTTCAAGTCCTCCTCCCAGGCCACCACCGCCCCCATCTCCTCCACCACCACCGCCGTCACATCTTTCTCCTCCATTACCGTCTAAACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTATTGATGGAGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGAGTAGTGGCAGGAATTATAGTGCTTTCCATAATCGGGTTTGTTGTTTGGTACATCAGGAGGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACAGTTCATCAAGACATACATGCCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATACGAAGAACTCTTCAAAGCAACAGATGCATTTTCTACTCAGAACCTTTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATCTCAAAGGGAATGGCGAGCTCGTTCTGGAATGGACAAAGCGCATTAAGATCGCAGCTGGTGCAGCTCGGGGAGTTGCTTATCTTCATGAAGACTGCCACCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGACGAAAATTTTGAAGCTCGGGTTTCTGACTTTGGGCTTGCTAAATTAGCTCTCGACGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACTGAGAGGTCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGCTGATTACTGGTCGAAAGGCTGTGGACGCATCCCAACCAATGGGGAATGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTGGACCCAAGGCTTGAAAGGAACTACGTCGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGGCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCCACAGCAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCAGTCAACAATCTGCTGAAATTAGATTTTTCCGAATGCTGGCCTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2172 51.1 MAAVSPAPNSSPSPASPSTPSPPPPVASNSPPSTPTLSPPQQSPPPNPSDSATPTSSPPPPSRQPSAATPPPASETPPPSTPALSPPRRRMVPPATPPSTPSNAPPPSTPDPPPPSATPPVSSTPPTPSNPPPNSSPPPAAQPPQSPPQSSKPPENPPPLRPPPPQANPPDNPAPPPQPTNPPGNSPPTPPSALPPATSPPSPASIPPRNSPPPPRLTPPPGEPSLSSPPPRPPPPPSPPPPPPSHLSPPLPSKPPTLPSGNRTDDGSGPIDGGANSKSNSNGGISSGGVIAIGVVAGIIVLSIIGFVVWYIRRPRKNDSGRGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHASGSGSGSGSGGIYTPKELGGLGSSRPLFTYEELFKATDAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGNGELVLEWTKRIKIAAGAARGVAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSSQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36493057 36496791 - CePI673135_05g025480.1 Cec05g2548 204351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2548 723 MobiDBLite consensus disorder prediction 10 257 - -
Cec05g2548 723 PRINTS Proline rich extensin signature 36 53 - -
Cec05g2548 723 PRINTS Proline rich extensin signature 61 86 - -
Cec05g2548 723 PRINTS Proline rich extensin signature 18 34 - -
Cec05g2548 723 PRINTS Proline rich extensin signature 1 18 - -
Cec05g2548 723 ProSitePatterns Protein kinases ATP-binding region signature. 400 422 IPR017441 GO:0005524(InterPro)
Cec05g2548 723 FunFam Proline-rich receptor-like protein kinase PERK8 367 469 - -
Cec05g2548 723 ProSiteProfiles Protein kinase domain profile. 394 672 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g2548 723 SUPERFAMILY Protein kinase-like (PK-like) 377 667 IPR011009 -
Cec05g2548 723 CDD STKc_IRAK 400 672 - -
Cec05g2548 723 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 253 701 IPR047117 -
Cec05g2548 723 Pfam Protein kinase domain 395 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g2548 723 CDD TM_EGFR-like 286 318 - -
Cec05g2548 723 Gene3D Transferase(Phosphotransferase) domain 1 470 688 - -
Cec05g2548 723 Gene3D Phosphorylase Kinase; domain 1 371 469 - -
Cec05g2548 723 FunFam proline-rich receptor-like protein kinase PERK8 470 683 - -
Cec05g2548 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g2548 723 MobiDBLite consensus disorder prediction 1 283 - -
Cec05g2548 723 SMART serkin_6 394 673 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0795 Cec-Chr1:8752682 Cec05g2548 Cec-Chr5:36493057 1.10E-61 dispersed
Cec05g1184 Cec-Chr5:10793901 Cec05g2548 Cec-Chr5:36493057 3.70E-63 dispersed
Cec05g2548 Cec-Chr5:36493057 Cec11g0552 Cec-Chr11:6039190 2.00E-147 dispersed
Cec10g0320 Cec-Chr10:3850729 Cec05g2548 Cec-Chr5:36493057 1.80E-41 dispersed
Cec11g0460 Cec-Chr11:4903342 Cec05g2548 Cec-Chr5:36493057 4.50E-40 dispersed
Cec05g2548 Cec-Chr5:36493057 Cec05g2553 Cec-Chr5:36547815 7.20E-69 proximal
Cec02g0389 Cec-Chr2:3672593 Cec05g2548 Cec-Chr5:36493057 3.00E-49 transposed
Cec02g2363 Cec-Chr2:40877746 Cec05g2548 Cec-Chr5:36493057 8.20E-31 transposed
Cec04g2036 Cec-Chr4:38463648 Cec05g2548 Cec-Chr5:36493057 1.30E-45 transposed
Cec01g0594 Cec-Chr1:6301208 Cec05g2548 Cec-Chr5:36493057 3.80E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72039 PF00069 Pkinase 2.70E-43 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2548 - - - 0.0