Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2548 | ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCCACTCCATCTCCGCCGCCTCCGGTCGCATCTAATTCCCCACCTAGTACTCCGACACTGTCGCCGCCGCAACAATCGCCTCCTCCGAATCCGTCTGACTCCGCGACTCCCACTTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTGCTACACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCGGCGTCGGATGGTTCCGCCGGCAACTCCACCATCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCACCACCATCAGCAACCCCACCAGTAAGCTCCACTCCACCAACGCCATCTAATCCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCACAATCATCAAAACCACCTGAAAACCCCCCTCCGCTGCGGCCGCCACCACCACAAGCAAACCCGCCGGATAATCCAGCGCCGCCGCCACAGCCCACAAACCCACCTGGGAATTCACCTCCTACGCCACCATCAGCACTGCCTCCAGCTACCTCACCTCCTTCCCCAGCATCCATACCTCCAAGAAATTCACCTCCACCCCCAAGGCTTACTCCTCCTCCCGGTGAGCCCTCACTTTCAAGTCCTCCTCCCAGGCCACCACCGCCCCCATCTCCTCCACCACCACCGCCGTCACATCTTTCTCCTCCATTACCGTCTAAACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTATTGATGGAGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGAGTAGTGGCAGGAATTATAGTGCTTTCCATAATCGGGTTTGTTGTTTGGTACATCAGGAGGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACAGTTCATCAAGACATACATGCCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATACGAAGAACTCTTCAAAGCAACAGATGCATTTTCTACTCAGAACCTTTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATCTCAAAGGGAATGGCGAGCTCGTTCTGGAATGGACAAAGCGCATTAAGATCGCAGCTGGTGCAGCTCGGGGAGTTGCTTATCTTCATGAAGACTGCCACCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGACGAAAATTTTGAAGCTCGGGTTTCTGACTTTGGGCTTGCTAAATTAGCTCTCGACGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACTGAGAGGTCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGCTGATTACTGGTCGAAAGGCTGTGGACGCATCCCAACCAATGGGGAATGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTGGACCCAAGGCTTGAAAGGAACTACGTCGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGGCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCCACAGCAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCAGTCAACAATCTGCTGAAATTAGATTTTTCCGAATGCTGGCCTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA | 2172 | 51.1 | MAAVSPAPNSSPSPASPSTPSPPPPVASNSPPSTPTLSPPQQSPPPNPSDSATPTSSPPPPSRQPSAATPPPASETPPPSTPALSPPRRRMVPPATPPSTPSNAPPPSTPDPPPPSATPPVSSTPPTPSNPPPNSSPPPAAQPPQSPPQSSKPPENPPPLRPPPPQANPPDNPAPPPQPTNPPGNSPPTPPSALPPATSPPSPASIPPRNSPPPPRLTPPPGEPSLSSPPPRPPPPPSPPPPPPSHLSPPLPSKPPTLPSGNRTDDGSGPIDGGANSKSNSNGGISSGGVIAIGVVAGIIVLSIIGFVVWYIRRPRKNDSGRGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHASGSGSGSGSGGIYTPKELGGLGSSRPLFTYEELFKATDAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGNGELVLEWTKRIKIAAGAARGVAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSSQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA | 723 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 36493057 | 36496791 | - | CePI673135_05g025480.1 | Cec05g2548 | 204351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2548 | 723 | MobiDBLite | consensus disorder prediction | 10 | 257 | - | - | |
Cec05g2548 | 723 | PRINTS | Proline rich extensin signature | 36 | 53 | - | - | |
Cec05g2548 | 723 | PRINTS | Proline rich extensin signature | 61 | 86 | - | - | |
Cec05g2548 | 723 | PRINTS | Proline rich extensin signature | 18 | 34 | - | - | |
Cec05g2548 | 723 | PRINTS | Proline rich extensin signature | 1 | 18 | - | - | |
Cec05g2548 | 723 | ProSitePatterns | Protein kinases ATP-binding region signature. | 400 | 422 | IPR017441 | GO:0005524(InterPro) | |
Cec05g2548 | 723 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 367 | 469 | - | - | |
Cec05g2548 | 723 | ProSiteProfiles | Protein kinase domain profile. | 394 | 672 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec05g2548 | 723 | SUPERFAMILY | Protein kinase-like (PK-like) | 377 | 667 | IPR011009 | - | |
Cec05g2548 | 723 | CDD | STKc_IRAK | 400 | 672 | - | - | |
Cec05g2548 | 723 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 253 | 701 | IPR047117 | - | |
Cec05g2548 | 723 | Pfam | Protein kinase domain | 395 | 603 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec05g2548 | 723 | CDD | TM_EGFR-like | 286 | 318 | - | - | |
Cec05g2548 | 723 | Gene3D | Transferase(Phosphotransferase) domain 1 | 470 | 688 | - | - | |
Cec05g2548 | 723 | Gene3D | Phosphorylase Kinase; domain 1 | 371 | 469 | - | - | |
Cec05g2548 | 723 | FunFam | proline-rich receptor-like protein kinase PERK8 | 470 | 683 | - | - | |
Cec05g2548 | 723 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 516 | 528 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cec05g2548 | 723 | MobiDBLite | consensus disorder prediction | 1 | 283 | - | - | |
Cec05g2548 | 723 | SMART | serkin_6 | 394 | 673 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0795 | Cec-Chr1:8752682 | Cec05g2548 | Cec-Chr5:36493057 | 1.10E-61 | dispersed | |
Cec05g1184 | Cec-Chr5:10793901 | Cec05g2548 | Cec-Chr5:36493057 | 3.70E-63 | dispersed | |
Cec05g2548 | Cec-Chr5:36493057 | Cec11g0552 | Cec-Chr11:6039190 | 2.00E-147 | dispersed | |
Cec10g0320 | Cec-Chr10:3850729 | Cec05g2548 | Cec-Chr5:36493057 | 1.80E-41 | dispersed | |
Cec11g0460 | Cec-Chr11:4903342 | Cec05g2548 | Cec-Chr5:36493057 | 4.50E-40 | dispersed | |
Cec05g2548 | Cec-Chr5:36493057 | Cec05g2553 | Cec-Chr5:36547815 | 7.20E-69 | proximal | |
Cec02g0389 | Cec-Chr2:3672593 | Cec05g2548 | Cec-Chr5:36493057 | 3.00E-49 | transposed | |
Cec02g2363 | Cec-Chr2:40877746 | Cec05g2548 | Cec-Chr5:36493057 | 8.20E-31 | transposed | |
Cec04g2036 | Cec-Chr4:38463648 | Cec05g2548 | Cec-Chr5:36493057 | 1.30E-45 | transposed | |
Cec01g0594 | Cec-Chr1:6301208 | Cec05g2548 | Cec-Chr5:36493057 | 3.80E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
72039 | PF00069 | Pkinase | 2.70E-43 | CL0016 | Cec | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2548 | - | - | - | 0.0 |