Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2553 ATGGTTCAAATGGGAATTATTAGAATAAAAGTTTCCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATGGAATTCTTCTGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACGAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCCCATCTCAAGAGTCTTCAATACTTGAGGCTTAATAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTTAGTGGCCCATTGCCCAGATTGCAAGCTAAAACATACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTTTTATTTGCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCAAAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGGCACAACCAGCAGATTTTCTTCGATGTTAATGACCAAAGATTTGAAGAAATTTGCCTTGGGAACCTAAGGATCTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACGGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGTATGACAACCACAGAGAGACTTTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGCATCCCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCGGCAAGAGGGTTGCTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCGCATGTGACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCCAATCAGAAAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGATAAGGATCTGAGGAACAATTACGACAGGATTGAGCTTGAAGAAATGGTTCAGGTAGCTCTTTTATGCACACAGTATCTTCCAACTACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAGTTCTCCTCGTCAGAGCGATACTCTGATCTAACAGATGATTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1890 43.39 MVQMGIIRIKVSIFFFFFFFFFFLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLQAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQKPQPSGRSKGQKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEICLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36547815 36550906 + CePI673135_05g025530.1 Cec05g2553 204356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2553 629 Gene3D Ribonuclease Inhibitor 38 219 IPR032675 -
Cec05g2553 629 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 629 - -
Cec05g2553 629 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Cec05g2553 629 SUPERFAMILY Protein kinase-like (PK-like) 287 579 IPR011009 -
Cec05g2553 629 SUPERFAMILY L domain-like 41 210 - -
Cec05g2553 629 ProSiteProfiles Protein kinase domain profile. 309 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g2553 629 FunFam Putative LRR receptor-like serine/threonine-protein kinase 38 219 - -
Cec05g2553 629 Gene3D Transferase(Phosphotransferase) domain 1 386 598 - -
Cec05g2553 629 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515(InterPro)
Cec05g2553 629 Pfam Leucine Rich Repeat 105 126 IPR001611 GO:0005515(InterPro)
Cec05g2553 629 Pfam Leucine Rich Repeat 153 175 IPR001611 GO:0005515(InterPro)
Cec05g2553 629 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524(InterPro)
Cec05g2553 629 Pfam Protein tyrosine and serine/threonine kinase 312 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g2553 629 FunFam Somatic embryogenesis receptor-like kinase 1 386 598 - -
Cec05g2553 629 Gene3D Phosphorylase Kinase; domain 1 278 385 - -
Cec05g2553 629 FunFam Somatic embryogenesis receptor kinase 1 278 385 - -
Cec05g2553 629 SMART serkin_6 309 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g2553 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0751 Cec-Chr1:8201332 Cec05g2553 Cec-Chr5:36547815 2.20E-232 dispersed
Cec05g2553 Cec-Chr5:36547815 Cec11g0528 Cec-Chr11:5619330 3.60E-230 dispersed
Cec05g2548 Cec-Chr5:36493057 Cec05g2553 Cec-Chr5:36547815 7.20E-69 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72040 PF00069 Pkinase 1.10E-44 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2553 - - - 0.0