Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2576 ATGAGAGCCTTTTCGGTTTCTAAGTGTTTGATTAAGTCAAAGTTCATGTCTAGGTGTCTAAAAGTTAACGTTCATTCAAGGACAACTGTAAGTTGTTCATCGAGATTCATGTGTGTGTTGCACTCACATGGCCTCACACTTAATCGACATTTCTGCTATTCTGTTCGATTGTTACTCGACATTTCTGACTGGTGTTACCGACAGATGAAGGATCAAGTGAAATGCAGGATCCTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCTCGGCTTGAGGCGGAATCCGTCACTACCTCCTTCGTTCTGGACCAGAAGGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAAATGTTGTTTCTACTTTAAGCGAAACTGTAGTGGATGAGGTTCTTGATAGCTTGAGAACTCAGAATCCTGATGTTGCTGTAGCTTTTTTCTATTTGTTAAGAAATGAGTACGGATTTCGGCATTCCAGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCAGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCAATTGCTTGAGGAGCAAGGGTCTGGTTCTGCATCTACATGTTGTGTCCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATAGTGTGGTATGGGATATGCTGGCATTTGTATACTCTAGACATGAAATGATCCATGATGCCCTCTTCGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGAATCTATACAGTGAGATAAAAGTTAGAGGTCCCCATAGTGAATATACTAACTCAATACTTATGCACGGCCTATGTGAGCAATCCAAGTTACAAGATGCAATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAAGTTTTGCAAAGTGGGGCTAATAGATGTTGCGAGGTCCTTTTTTTGTTTGATGGTAAAAAATGGACTGCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATCTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCAGATCTTGTGACATATACAATACTGATGTGTGGACATTGTCAAATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGTGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTTTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTGCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAAGTATTTTGATGCTTTGACTCACATGGATCTGATAGAGGATGTTATTTTGTACAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTACAGAATGATTGAAAGAGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTATCAAAGGATTCTGCAGAATGGGAGACCTAGAGGAGGCTCAAAAGATGTTGGAAGTTATTAGGTTGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATCTTCTTCATGAGATGGAGGCAAACGCTGTTGTTCCAACTCATGTAACTTATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAGGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACCATTATCCAATGTTTATGCAAGGGAAGAGACATTGACAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATATATGGTGACCTAAAGGATGCTGATCAAATGCTAGTTTCTATGGAGGATCGAAATATAAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCGTTAGGGTTCTTCAATCGAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCGTAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGCTTTCCATCAACAGGGCGACAACAGTTTAGTGTTAGAATTCCTTGCTATGGTATATGAGATACAGGGTGTAGAGGATAAATTTCCCTCGGAGGAATATTTCAAACTTTATGCCACAGATCATCAACGAAAGGAAAATCATGTCAATGACCCTCATGGGGAGATCTCCCAGCTTTGGAGGCTGCAGCAGACTTATTGA 2790 39.28 MRAFSVSKCLIKSKFMSRCLKVNVHSRTTVSCSSRFMCVLHSHGLTLNRHFCYSVRLLLDISDWCYRQMKDQVKCRILASFSSVILARPSVSAARLEAESVTTSFVLDQKDPVCEILTGLNSFGFRAYVGGCNFRNVVSTLSETVVDEVLDSLRTQNPDVAVAFFYLLRNEYGFRHSRFSQFAVSHILAGKGRFKELHSVIKQLLEEQGSGSASTCCVLLLNKFRNWDSNSVVWDMLAFVYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWNLYSEIKVRGPHSEYTNSILMHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLSVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFENGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDIAEAMQLYYRMIERGITPSVVTFNTLIKGFCRMGDLEEAQKMLEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFHLLHEMEANAVVPTHVTYTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDPVTYNTIIQCLCKGRDIDKAFQLYNKMLLHNLDPTHVTYNVLINGLCIYGDLKDADQMLVSMEDRNISLTKVAYMTIIKAHCAKGQVSKALGFFNRMLAKSFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGVTPDSEICETMLNAFHQQGDNSLVLEFLAMVYEIQGVEDKFPSEEYFKLYATDHQRKENHVNDPHGEISQLWRLQQTY 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36697461 36702472 - CePI673135_05g025760.1 Cec05g2576 204379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2576 929 Gene3D Tetratricopeptide repeat domain 663 786 IPR011990 GO:0005515(InterPro)
Cec05g2576 929 Gene3D Tetratricopeptide repeat domain 279 392 IPR011990 GO:0005515(InterPro)
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Cec05g2576 929 Gene3D Tetratricopeptide repeat domain 134 278 IPR011990 GO:0005515(InterPro)
Cec05g2576 929 Gene3D Tetratricopeptide repeat domain 796 889 IPR011990 GO:0005515(InterPro)
Cec05g2576 929 Gene3D Tetratricopeptide repeat domain 547 662 IPR011990 GO:0005515(InterPro)
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 820 854 IPR002885 -
Cec05g2576 929 Pfam PPR repeat family 575 623 IPR002885 -
Cec05g2576 929 Pfam PPR repeat family 644 693 IPR002885 -
Cec05g2576 929 Pfam PPR repeat family 470 518 IPR002885 -
Cec05g2576 929 Pfam PPR repeat family 714 762 IPR002885 -
Cec05g2576 929 Pfam PPR repeat family 329 376 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 715 749 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 785 819 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Cec05g2576 929 SUPERFAMILY HCP-like 442 634 - -
Cec05g2576 929 Gene3D Tetratricopeptide repeat domain 393 461 IPR011990 GO:0005515(InterPro)
Cec05g2576 929 Gene3D Tetratricopeptide repeat domain 462 536 IPR011990 GO:0005515(InterPro)
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Cec05g2576 929 Pfam PPR repeat 824 852 IPR002885 -
Cec05g2576 929 Pfam PPR repeat 787 815 IPR002885 -
Cec05g2576 929 PANTHER OS03G0856100 PROTEIN 574 873 - -
Cec05g2576 929 Pfam PPR repeat 430 460 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 714 IPR002885 -
Cec05g2576 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 612 645 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 507 540 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 647 680 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 787 820 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 717 750 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 367 401 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 824 856 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 752 784 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 332 366 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 437 470 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 578 610 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 682 715 IPR002885 -
Cec05g2576 929 NCBIfam pentatricopeptide repeat 472 505 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2576 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32