Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2590 ATGAGTAACTCCGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCCGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTAGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 525 44.0 MSNSEDKSSMDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36794829 36796349 - CePI673135_05g025900.1 Cec05g2590 204393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2590 174 Gene3D High mobility group box domain 106 159 IPR036910 -
Cec05g2590 174 CDD HMG-box_SF 118 154 - -
Cec05g2590 174 FunFam protein CRABS CLAW isoform X3 109 168 - -
Cec05g2590 174 Pfam YABBY protein 15 157 IPR006780 GO:0007275(InterPro)
Cec05g2590 174 SUPERFAMILY HMG-box 103 155 IPR036910 -
Cec05g2590 174 MobiDBLite consensus disorder prediction 84 116 - -
Cec05g2590 174 MobiDBLite consensus disorder prediction 84 105 - -
Cec05g2590 174 PANTHER PROTEIN YABBY 6-RELATED 15 170 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2590 K25796 - - csv:101219863 308.145
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2590 Cec-Chr5:36794829 Cec05g2609 Cec-Chr5:36913110 1.00E-97 dispersed
Cec05g2590 Cec-Chr5:36794829 Cec11g0318 Cec-Chr11:3430874 1.80E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2590 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 1.9e-46 182.6
Cec05g2609 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 1.9e-46 182.6
Cec01g0381 . 95 255 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cec02g2367 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cec01g0381 . 51 245 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 2.0e-43 172.6
Cec06g1293 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.7e-42 168.3
Cec10g0303 . 18 189 C2C2-YABBY Transcription Factor Family AT1G08465 53.5 1.3e-39 159.8
Cec01g0381 . 62 254 C2C2-YABBY Transcription Factor Family AT4G00180 55.0 1.2e-49 193.4
Cec10g0303 . 29 189 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 4.1e-37 151.8
Cec05g2773 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 1.9e-39 159.8
Cec06g1293 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 70.4 2.9e-62 235.0
Cec11g0318 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 70.7 5.5e-61 230.7
Cec02g2367 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cec01g0381 . 53 217 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29665 PF04690 YABBY 5.70E-55 CL0114 Cec TF