Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2610 ATGGAGAATTCTAAAGAAAACAAGTTTGTGTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCTTTGGGAGGTCATATCAGAATTCACAAGAATGAGAAATCAACCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGTTTCAAGTTTCAAGTTCCGACAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGTTGGTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACGGAGGTTTGCTGATTCGGGATACAGTTCAAGGCAAGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAATCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAACGAAAGGGAAAACAGAAGGCTTGAATACAATTATGGGATCACACATCAGAAGCGGGCGTTTATAGAAGAAAATCAATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATGTGCTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTGAAAGGTCTGAATTTGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCTTCTAACTCTAATGGAGGACTAGAAATGAAAGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACGGTGAGAATTCCGACTCTGATAATTTCAGGAAAGAAATCTGCAAGAAGGTTAAATTGAAACTGTCTGTTCATCGGGCTCTTATGGATGAAGAATATAAGAAACCAGATTTCAAATTTGGAGTCAGGGTAGGAAGAGCAAGTGCAGATATTCTAAAGAATTCGATGAAAACTAAGAAAAATGATGATCAAGTGCATGCATCTTACAAGTACGAGCTGAGAAAGAGGTTGAAAAATGGATCATACAGTCCTGATCTCTGGGAGGGATCAAGCAAGAAGATGCCTAGCGAGAACTTCCGTTCTCATGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCGTAAACACCACTACCAATTCCATCTCTATACCATCTACGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGATACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTTAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCGTCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAGTGGGAGATTGGATTAA 1359 42.24 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSTRVAEKQRERSFKFQVPTERRRSKRDLESEVGNGNSGYGLRENPKITRRFADSGYSSRQEKFCRECGQGFQSSESLSWHLACHSGNERENRRLEYNYGITHQKRAFIEENQSDIPERVREAAMCLMMMSKAPRFSGLKGLNLAAESSDSKSSSRHFRESDTSASNSNGGLEMKEVTGRINKLEVSEFDGENSDSDNFRKEICKKVKLKLSVHRALMDEEYKKPDFKFGVRVGRASADILKNSMKTKKNDDQVHASYKYELRKRLKNGSYSPDLWEGSSKKMPSENFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSTELIESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEESGRLD 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36921281 36922639 + CePI673135_05g026100.1 Cec05g2610 204413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2610 452 MobiDBLite consensus disorder prediction 338 387 - -
Cec05g2610 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cec05g2610 452 SMART c2h2final6 97 119 IPR013087 -
Cec05g2610 452 SMART c2h2final6 9 31 IPR013087 -
Cec05g2610 452 SMART c2h2final6 390 412 IPR013087 -
Cec05g2610 452 SUPERFAMILY beta-beta-alpha zinc fingers 98 412 IPR036236 -
Cec05g2610 452 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cec05g2610 452 Pfam C2H2-type zinc finger 390 412 IPR013087 -
Cec05g2610 452 Pfam C2H2-type zinc finger 9 31 IPR013087 -
Cec05g2610 452 Pfam C2H2-type zinc finger 99 120 IPR013087 -
Cec05g2610 452 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 133 - -
Cec05g2610 452 MobiDBLite consensus disorder prediction 338 373 - -
Cec05g2610 452 MobiDBLite consensus disorder prediction 182 209 - -
Cec05g2610 452 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Cec05g2610 452 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cec05g2610 452 MobiDBLite consensus disorder prediction 35 65 - -
Cec05g2610 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 412 IPR013087 -
Cec05g2610 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cec05g2610 452 MobiDBLite consensus disorder prediction 35 78 - -
Cec05g2610 452 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Cec05g2610 452 Gene3D Classic Zinc Finger 1 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2610 Cec-Chr5:36921281 Cec07g0805 Cec-Chr7:18043355 1.30E-11 dispersed
Cec01g1737 Cec-Chr1:31973240 Cec05g2610 Cec-Chr5:36921281 5.90E-28 wgd
Cec05g2610 Cec-Chr5:36921281 Cec06g1779 Cec-Chr6:31289200 2.30E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29667 PF13912 zf-C2H2_6 6.30E-09 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2610 - - - 0.0