Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2622 ATGGCGATTCCTGGAGATCCAATGGCTTTTCCAACACTGGCTTCTTCTTATCAACGGCGTTCTCCGACGTCATTTCATCCTCTCAAGGTGGATCTCTCTAGTTCTGTTTATAGAAGATTTGGAAGTAAAGGAATAAAGCCAAAAAGGCATACCATGGCACATGAAAATGATAGCATACACAGTATCTCCCTGGAAGATGTTGAGAGCTCAGCAAATTATGAACGATCACCAAAATCCTTAAGTCAAGAGAGCTTCATCCTCAGTTCCATGAACATGAACTTTTTGGAACGATTAATATTGGCTTGGAGGATAATTTTTCCACCAACATCAACACCTAAATTGAACTCTAATGCTATGATAGCCAAGCAGCGGTTGAAGATGATTCTCTTGTCCGATCGATGTGCAGTGAATGACGAAGCTAAACAAAAGATTGTGGACAACATCTTGAGTACTCTTTCAGATTTTGTAGAAATAGATTCAGAAGATAAAGTTCAATTTAATGTCTCTACTGATTTAGATCTCAGAACAATTTACTCTGTAACGGTGCCTGTGCGAAGGGTGAAGGCTGAATATCAAGGCAGTGAGGAGGTTGAAGCAACCACGAATACAGACTTGAAAGATGATGGAGAAGGATCTGCCTCCGCAGGTCTCATTTTCGATTCGTTCATTGCAGATGGAAAAGTTGCGGGCTGTGCGGCCAGTAAATCAAGACCAGAGCCCAGAAAGAAGAAACAAAATGTGGAAGTTTTTTTTATTGAACCCGACGTGAATCGAACACACAACCTTCTGATCTGGAGTCAAACGCGCTGCCATTGCGCCACAGATCCATTGATGGATTCTCATCTGGCTCCCCTCTTTTGGTTACCTTTGTTCTTCGTTTTTCTCGTGTATATAAATTCGCTTCTTTTCTTCAACCCACTCCGTCGCAATTCCCTGAGCCTGTTTAGTTTTCCGTCATCACCCTCTCTTCGAACTCTCTTTCCCTACAGAACCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCTTCCAAGACTTATCCCCAGCAGGCTGGAACCATCCGCAAGAATGGTTACATTGTCATCAAGGGCAGACCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTCGGCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATTGTCCCCTCTTCACACAACTGTGACGTTCCTCATGTCAGTCGCACTGATTACCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACAGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAACTGATGAGAGTCTGCTGTCCCAGATTAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAG 1473 44.26 MAIPGDPMAFPTLASSYQRRSPTSFHPLKVDLSSSVYRRFGSKGIKPKRHTMAHENDSIHSISLEDVESSANYERSPKSLSQESFILSSMNMNFLERLILAWRIIFPPTSTPKLNSNAMIAKQRLKMILLSDRCAVNDEAKQKIVDNILSTLSDFVEIDSEDKVQFNVSTDLDLRTIYSVTVPVRRVKAEYQGSEEVEATTNTDLKDDGEGSASAGLIFDSFIADGKVAGCAASKSRPEPRKKKQNVEVFFIEPDVNRTHNLLIWSQTRCHCATDPLMDSHLAPLFWLPLFFVFLVYINSLLFFNPLRRNSLSLFSFPSSPSLRTLFPYRTMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPTDESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37004011 37009877 + CePI673135_05g026220.1 Cec05g2622 204425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2622 490 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 332 488 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cec05g2622 490 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 381 388 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cec05g2622 490 Pfam Translation initiation factor 5A-like, N-terminal 348 410 IPR048670 -
Cec05g2622 490 SUPERFAMILY Translation proteins SH3-like domain 346 424 IPR008991 -
Cec05g2622 490 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 416 485 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cec05g2622 490 Gene3D - 332 416 IPR014722 -
Cec05g2622 490 FunFam Eukaryotic translation initiation factor 5A 332 416 - -
Cec05g2622 490 Gene3D Cell division topological specificity factor MinE 106 184 IPR036707 GO:0032955(InterPro)|GO:0051301(InterPro)
Cec05g2622 490 SMART eIF_5a_2 416 485 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cec05g2622 490 FunFam Eukaryotic translation initiation factor 5A 417 489 - -
Cec05g2622 490 CDD S1_eIF5A 417 487 - -
Cec05g2622 490 Pfam Septum formation topological specificity factor MinE 119 185 IPR005527 GO:0032955(InterPro)|GO:0051301(InterPro)
Cec05g2622 490 Gene3D - 417 489 IPR012340 -
Cec05g2622 490 NCBIfam translation initiation factor IF-5A 348 484 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cec05g2622 490 SUPERFAMILY Nucleic acid-binding proteins 417 487 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2622 Cec-Chr5:37004011 Cec06g1424 Cec-Chr6:27782933 9.80E-82 dispersed
Cec05g2622 Cec-Chr5:37004011 Cec05g1805 Cec-Chr5:29892958 7.30E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2622 K03263 - csv:101222451 382.489