Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2648 ATGGCTTCCGTCCTTATCTTTTTGGCAGGTTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGCTGGACTGGGGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTATACAGCCAAGGATATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGCTCTTGCTACGAGATTAGGTGCGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCCTTCCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTTGATCTCTCTCAACCTGTATTCCAACACATTGCTCAATACAGAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAATGGGCACTCCTACTTCAACTTAGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGTAACAGCTACCTCAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGACGGCCGAACCGTCATCTCCAACAACGCTGTCCCAGCTGGCTGGTCCTTTGGACAGACTTACAGTGGTGCCCAATTCTGA 747 51.0 MASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37168435 37169395 + CePI673135_05g026480.1 Cec05g2648 204451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2648 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Cec05g2648 248 Gene3D - 156 248 IPR036749 -
Cec05g2648 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Cec05g2648 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Cec05g2648 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cec05g2648 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Cec05g2648 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Cec05g2648 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cec05g2648 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Cec05g2648 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 CDD DPBB_EXPA_N 25 151 - -
Cec05g2648 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cec05g2648 248 PANTHER EXPANSIN-A15 12 248 IPR002963 GO:0009664(InterPro)
Cec05g2648 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Cec05g2648 248 FunFam Expansin 156 248 - -
Cec05g2648 248 FunFam Expansin 15 152 - -
Cec05g2648 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Cec05g2648 248 Gene3D - 13 152 IPR036908 -
Cec05g2648 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Cec05g2648 248 SMART dpbb_1 61 146 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2648 Cec-Chr5:37168435 Cec11g0596 Cec-Chr11:6554473 6.00E-112 dispersed
Cec08g1462 Cec-Chr8:26371616 Cec05g2648 Cec-Chr5:37168435 4.40E-97 transposed
Cec11g0996 Cec-Chr11:16789062 Cec05g2648 Cec-Chr5:37168435 6.20E-120 transposed
Cec01g1758 Cec-Chr1:32142637 Cec05g2648 Cec-Chr5:37168435 2.50E-91 wgd
Cec05g2648 Cec-Chr5:37168435 Cec06g1810 Cec-Chr6:31564656 5.30E-116 wgd
Cec05g2648 Cec-Chr5:37168435 Cec09g1926 Cec-Chr9:36138553 1.50E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2648 - - - 0.0