Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2649 ATGGGAAGGGTAAAATTGAAGATTAAGAGATTGGAGAATACAAACGGACGCCAAGCAACTTATTCTAAAAGAAAGAACGGCATTATGAAGAAGGCTAAGGAATTATCTATTTTATGTGACATTGATATTATTCTTCTCATGTTTTCACCTACCGGAAAGCCTAATCTTTGTTGTGGCAAACGCAGCATTGAGGAGGTAATCGCTAGGTTTGCTCAACAAACTCCCCAGGAAAGGGCAAAAAGGAAAATGGAAAGCCTTGATTCACTGCGGAAAACTTTCAAGAAATTGGACCACGATGTCAACATTCAAGATTTCCTAGGAACAAGTAGCCAAACGATTGAGGATCTGGCTGGCCAAGCAAAGTTATTAAGGACCCAACTTTCTGAAGTTCATCAGAGATTAAGCTATTGGAGCAACCCTGACAAGATAAACAATGTGGATCACTTGGCCCAAATGGAGGATTCGCTGAGAGAATCACTTAATCAAGTTCGATTGCATAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCACTAATCAGGATGGAATGGATCTACCTTTCAATATGAGTGTTGAGCAACAACTTCAACAACTTCAACACTTCTCTTGGATTCATAGTGATAATCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCTCCATCGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGTCGAAGTCCGGAGATTTCAAATCCTGGACAAGAAAATGGCGTCCTTCCTGAACTAAGCAGAACAGAACCTCTAAGGCCTCAACCAGGAGGGCAAAATTCCTACATGTCTTATAATGTTAACTTTTTTAATGACCCCAGATTTCAACCTGCAGCAGAGATGAACCTGCCAACGATCGCTTGTTTCCTTAATATAGTAATTCTGGAACAGTTGATCGCGTACCTGATAGCTTGA 969 41.18 MGRVKLKIKRLENTNGRQATYSKRKNGIMKKAKELSILCDIDIILLMFSPTGKPNLCCGKRSIEEVIARFAQQTPQERAKRKMESLDSLRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKLLRTQLSEVHQRLSYWSNPDKINNVDHLAQMEDSLRESLNQVRLHKENLQKHPPVPLEFTNQDGMDLPFNMSVEQQLQQLQHFSWIHSDNQNIVLHDDPNFVLHRDVECSASSSFASYPGYFGTGRSPEISNPGQENGVLPELSRTEPLRPQPGGQNSYMSYNVNFFNDPRFQPAAEMNLPTIACFLNIVILEQLIAYLIA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37170815 37174369 - CePI673135_05g026490.1 Cec05g2649 204452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2649 322 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec05g2649 322 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 Coils Coil 149 169 - -
Cec05g2649 322 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Cec05g2649 322 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cec05g2649 322 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 MobiDBLite consensus disorder prediction 248 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2649 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2649 Cec-Chr5:37170815 Cec11g1650 Cec-Chr11:30825720 1.50E-14 dispersed
Cec01g1760 Cec-Chr1:32147733 Cec05g2649 Cec-Chr5:37170815 6.40E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29672 PF00319 SRF-TF 2.00E-19 No_clan Cec TF