Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2649 ATGGGAAGGGTAAAATTGAAGATTAAGAGATTGGAGAATACAAACGGACGCCAAGCAACTTATTCTAAAAGAAAGAACGGCATTATGAAGAAGGCTAAGGAATTATCTATTTTATGTGACATTGATATTATTCTTCTCATGTTTTCACCTACCGGAAAGCCTAATCTTTGTTGTGGCAAACGCAGCATTGAGGAGGTAATCGCTAGGTTTGCTCAACAAACTCCCCAGGAAAGGGCAAAAAGGAAAATGGAAAGCCTTGATTCACTGCGGAAAACTTTCAAGAAATTGGACCACGATGTCAACATTCAAGATTTCCTAGGAACAAGTAGCCAAACGATTGAGGATCTGGCTGGCCAAGCAAAGTTATTAAGGACCCAACTTTCTGAAGTTCATCAGAGATTAAGCTATTGGAGCAACCCTGACAAGATAAACAATGTGGATCACTTGGCCCAAATGGAGGATTCGCTGAGAGAATCACTTAATCAAGTTCGATTGCATAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCACTAATCAGGATGGAATGGATCTACCTTTCAATATGAGTGTTGAGCAACAACTTCAACAACTTCAACACTTCTCTTGGATTCATAGTGATAATCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCTCCATCGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGTCGAAGTCCGGAGATTTCAAATCCTGGACAAGAAAATGGCGTCCTTCCTGAACTAAGCAGAACAGAACCTCTAAGGCCTCAACCAGGAGGGCAAAATTCCTACATGTCTTATAATGTTAACTTTTTTAATGACCCCAGATTTCAACCTGCAGCAGAGATGAACCTGCCAACGATCGCTTGTTTCCTTAATATAGTAATTCTGGAACAGTTGATCGCGTACCTGATAGCTTGA 969 41.18 MGRVKLKIKRLENTNGRQATYSKRKNGIMKKAKELSILCDIDIILLMFSPTGKPNLCCGKRSIEEVIARFAQQTPQERAKRKMESLDSLRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKLLRTQLSEVHQRLSYWSNPDKINNVDHLAQMEDSLRESLNQVRLHKENLQKHPPVPLEFTNQDGMDLPFNMSVEQQLQQLQHFSWIHSDNQNIVLHDDPNFVLHRDVECSASSSFASYPGYFGTGRSPEISNPGQENGVLPELSRTEPLRPQPGGQNSYMSYNVNFFNDPRFQPAAEMNLPTIACFLNIVILEQLIAYLIA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37170815 37174369 - CePI673135_05g026490.1 Cec05g2649 204452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2649 322 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec05g2649 322 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 Coils Coil 149 169 - -
Cec05g2649 322 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Cec05g2649 322 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cec05g2649 322 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g2649 322 MobiDBLite consensus disorder prediction 248 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2649 Cec-Chr5:37170815 Cec11g1650 Cec-Chr11:30825720 1.50E-14 dispersed
Cec01g1760 Cec-Chr1:32147733 Cec05g2649 Cec-Chr5:37170815 6.40E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29672 PF00319 SRF-TF 2.00E-19 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2649 - - - 0.0