Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2670 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCCTCCGCAAACAACGGAGGAACAACAACGACGACAATAACAACAACAACTCCAAATCCAAATCTTCAATCTTCTTCTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGTATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAACAAGCTGAGCCTGCCGTTATTGCTGCAACCGGTACTGGTACCATTCCAGCTAATTTCACTTCTCTTAATATCTCCCTCCGTAGCTCCGGCTCCACCATTTCCGCTCCTTCTCATCTTCGGACGAGCTATTTTAGTCCCACGCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGACAGAAACAACAATCATAATCATAATCTCGTGGATGATTCCTCTACGTTCTTGAATTTCAACGCTCCTAATTATGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGACGTCACCGAGGCGGGAAAGAAACGGCGGTCGGAGCAGTCAGAATCATCGTCGGATAATTATTTGGTTCAAACGAGTACCGGGTCAATTCCAGCGAGTCAAAGCAGTCCATTGCCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCTGTGGGTAACAGCAGCATGTTGAGAGGGGCGGGGGCGGGTGGTGGCGGCGGCGGCGGCGGCGGGGGATTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGACAACAGTTGGGGACAGGAATCGGCAGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCTGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACATCAAATAATCCTGATCAATCATAG 1071 49.67 MIMDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTTITTTTPNPNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNAPNYVNVFKQDQGGIDVTEAGKKRRSEQSESSSDNYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGSGGGPATESHLGMLAALSAYRTTMPGLSVSESPTSNNPDQS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37290645 37291715 + CePI673135_05g026700.1 Cec05g2670 204473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2670 356 MobiDBLite consensus disorder prediction 212 242 - -
Cec05g2670 356 Pfam TCP family transcription factor 68 181 IPR017887 -
Cec05g2670 356 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 324 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec05g2670 356 MobiDBLite consensus disorder prediction 224 242 - -
Cec05g2670 356 MobiDBLite consensus disorder prediction 1 82 - -
Cec05g2670 356 ProSiteProfiles TCP domain profile. 69 123 IPR017887 -
Cec05g2670 356 MobiDBLite consensus disorder prediction 28 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2670 Cec-Chr5:37290645 Cec06g0019 Cec-Chr6:230762 5.90E-28 dispersed
Cec11g1393 Cec-Chr11:28166933 Cec05g2670 Cec-Chr5:37290645 9.20E-38 transposed
Cec01g1783 Cec-Chr1:32310893 Cec05g2670 Cec-Chr5:37290645 8.00E-44 wgd
Cec05g2670 Cec-Chr5:37290645 Cec06g1822 Cec-Chr6:31656827 2.00E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29678 PF03634 TCP 4.00E-38 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2670 - - - 0.0