Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2678 ATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGAAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAATTGGGAAATAAACTTGAACCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAGCCAAGACAAATTGCTATTTGGTTTCAAAACAGAAGAGCTCGCTGGAAAACCAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATAAAATTAGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCATCAACATCCAACAAATAGGCCTCTTTTTCCCACTTCTTCCTTAAGGCCTCCAGCTTTGGCTCAACTCTTTCAAACCTCTTCAAGATCATCAGATCATCCACCAAAGCAACTTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAACAACATTTCAACTGA 864 40.86 MLQTSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDHPPKQLDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37381137 37382412 + CePI673135_05g026780.1 Cec05g2678 204481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2678 287 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677(InterPro)
Cec05g2678 287 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677(InterPro)
Cec05g2678 287 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec05g2678 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 268 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cec05g2678 287 Coils Coil 120 168 - -
Cec05g2678 287 Gene3D - 65 134 - -
Cec05g2678 287 MobiDBLite consensus disorder prediction 169 267 - -
Cec05g2678 287 MobiDBLite consensus disorder prediction 1 16 - -
Cec05g2678 287 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677(InterPro)
Cec05g2678 287 MobiDBLite consensus disorder prediction 51 73 - -
Cec05g2678 287 SMART HOX_1 71 132 IPR001356 GO:0003677(InterPro)
Cec05g2678 287 CDD homeodomain 73 129 IPR001356 GO:0003677(InterPro)
Cec05g2678 287 Pfam Homeodomain 73 126 IPR001356 GO:0003677(InterPro)
Cec05g2678 287 MobiDBLite consensus disorder prediction 205 245 - -
Cec05g2678 287 Pfam Homeobox associated leucine zipper 128 168 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2678 287 MobiDBLite consensus disorder prediction 176 198 - -
Cec05g2678 287 MobiDBLite consensus disorder prediction 1 28 - -
Cec05g2678 287 FunFam Homeobox-leucine zipper protein ATHB-13 65 132 - -
Cec05g2678 287 SUPERFAMILY Homeodomain-like 62 130 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2678 Cec-Chr5:37381137 Cec10g0860 Cec-Chr10:18362584 1.70E-25 dispersed
Cec05g2678 Cec-Chr5:37381137 Cec09g1947 Cec-Chr9:36488525 6.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29680 PF00046 Homeodomain 2.80E-15 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2678 K09338 - csv:101221595 538.88