Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2686 ATGCAAGAGAAGCAAGAGAAGACATATAAAGTCTGGCAATCCTTCCAACCATTTCAAGTTTTTACCAATTGGTCGGCTCTACCCAAAATGTCCATCCTTAGTGCTTCTCCACGCAAACCATTCAATAGAAACTCAGAAATCATTGCATTTACAGATGCCAAGTGTCTGTGGGGCATTTCGTCGAACGCCTTTAGGCTGTTGCTCCATAGACTTTCTCAATCCATCAACATCAGTGAAGGCTCTCGCCGCGCTAGGTTACAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGATTTCAAGAGGTTGCAGCAAGATCCACCTGCTGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCATGGGATGGAGGTACGTTTAAGCTTACTCTTCAGTTTACTGAGGATTATCCAAATAAGCCACCAACAGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACATTTATGCCGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGTCGCTGCTGTGTGATCCCAATCCAAACTCTCCGGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAATAAGCATCCTCCTTCCTTCTTTAATATGCGTTTGATGATCTGCAAAATCAAAACAGAGTTCAAATGCAGGTCCTTGATTAGGCTTCTGGATTTAAACGTCAAAGGCAAATGGGAACGATTTGTTTGTGCTCAAGAATGGACCAAAGGCCGATGCCTCAGATTGGCTGCTCTTCCACGTGCTGCGAAGTTTAGGGCAGAGATCCAGGGGTTTTGTTTACGGCGTGGGTATGGGAAAGGATTTATCGACGTGCAACGAGCTGGTGTTTTAGTTTCGTTAAGGCATGGGTTTGTAGTAGCTAGTTGTTTGTTTTCTGGATTGAATTATGTGTCTAAGCTGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGGGACTTTAAGAGGCTGCAACAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTTTGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTGCAGTTCACCGAGGATTATCCAAATAAGCCACCGACAGTCCGCTTTGTGTCTAGAATGTTCCACCCCAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAATGGAGCCCAATCTATGATGTAGCAGCTATACTTACCTCTATTCAGTCGTTGCTGTGCGACCCCAATCCAAATTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAACAAGCGCAAGTTTTCTTCTATCCCTAAATTCTGGCATTTGATTGAGGTAAATGCCATTTTATCAATTGACCGGAAACTTCTATGGGCAAGGAGGGCTAATGTAAGAAGTGATGGTTGTCGTTTTGCATACGAAACTTTACTGCCAACTTTTGTACAAGGGCTTTTGAAATTCAAGAATAAGCTCAGGTAA 1599 43.96 MQEKQEKTYKVWQSFQPFQVFTNWSALPKMSILSASPRKPFNRNSEIIAFTDAKCLWGISSNAFRLLLHRLSQSINISEGSRRARLQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKHPPSFFNMRLMICKIKTEFKCRSLIRLLDLNVKGKWERFVCAQEWTKGRCLRLAALPRAAKFRAEIQGFCLRRGYGKGFIDVQRAGVLVSLRHGFVVASCLFSGLNYVSKLVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRKFSSIPKFWHLIEVNAILSIDRKLLWARRANVRSDGCRFAYETLLPTFVQGLLKFKNKLR 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37432080 37447324 - CePI673135_05g026860.1 Cec05g2686 204489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2686 532 FunFam Ubiquitin-conjugating enzyme E2 2 338 485 - -
Cec05g2686 532 Gene3D Ubiquitin Conjugating Enzyme 71 271 IPR016135 -
Cec05g2686 532 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 167 182 IPR023313 -
Cec05g2686 532 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 92 233 IPR050113 GO:0000209(PANTHER)|GO:0006281(PANTHER)|GO:0016574(PANTHER)|GO:0043161(PANTHER)|GO:0061631(PANTHER)
Cec05g2686 532 Gene3D Ubiquitin Conjugating Enzyme 336 482 IPR016135 -
Cec05g2686 532 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 414 429 IPR023313 -
Cec05g2686 532 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 94 243 IPR000608 -
Cec05g2686 532 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 341 487 IPR000608 -
Cec05g2686 532 CDD UBCc 344 481 IPR000608 -
Cec05g2686 532 SUPERFAMILY UBC-like 84 224 IPR016135 -
Cec05g2686 532 Pfam Ubiquitin-conjugating enzyme 98 224 IPR000608 -
Cec05g2686 532 Pfam Ubiquitin-conjugating enzyme 345 477 IPR000608 -
Cec05g2686 532 CDD UBCc 97 224 IPR000608 -
Cec05g2686 532 SUPERFAMILY UBC-like 332 483 IPR016135 -
Cec05g2686 532 SMART ubc_7 344 489 - -
Cec05g2686 532 SMART ubc_7 97 249 - -
Cec05g2686 532 FunFam Ubiquitin-conjugating enzyme E2-17 kDa 91 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2686 K10573 - - mtr:25502755 287.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0830 Cec-Chr2:9911841 Cec05g2686 Cec-Chr5:37432080 6.60E-26 dispersed
Cec03g0165 Cec-Chr3:1632556 Cec05g2686 Cec-Chr5:37432080 1.10E-24 dispersed
Cec05g2686 Cec-Chr5:37432080 Cec05g1032 Cec-Chr5:9014177 2.20E-34 dispersed
Cec10g1873 Cec-Chr10:33564933 Cec05g2686 Cec-Chr5:37432080 3.40E-06 dispersed
Cec05g2686 Cec-Chr5:37432080 Cec01g0205 Cec-Chr1:1988421 1.30E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71