Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2688 | ATGGCTATGCACTGGCTACTGCTAACATTGTCCTTGCTGGCAACTACCGCATTTGCTGACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGACGCCTTTGAGCCTAATCCTGAAACCGTCACCAACTCCTTCAATGCAGAAGTAGGCCAGTTATTGAGTGGAAGCAACGGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGCGATGCGACCCCAATTGGGCCAAGAACCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACTCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATTAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGACGGCATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCCATCATGGGATCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCACGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGCTTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCACTCGCCTGCTTCGTTGGTCGCCCTTGCTAA | 1299 | 49.5 | MAMHWLLLTLSLLATTAFADIGNFDDYWKARAVDAEQAAADAFEPNPETVTNSFNAEVGQLLSGSNGTRRNLKKYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 37456422 | 37457980 | - | CePI673135_05g026880.1 | Cec05g2688 | 204491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2688 | 432 | PRINTS | Pollen allergen Amb family signature | 105 | 122 | IPR018082 | - | |
Cec05g2688 | 432 | PRINTS | Pollen allergen Amb family signature | 309 | 328 | IPR018082 | - | |
Cec05g2688 | 432 | PRINTS | Pollen allergen Amb family signature | 373 | 397 | IPR018082 | - | |
Cec05g2688 | 432 | PRINTS | Pollen allergen Amb family signature | 403 | 426 | IPR018082 | - | |
Cec05g2688 | 432 | PRINTS | Pollen allergen Amb family signature | 165 | 181 | IPR018082 | - | |
Cec05g2688 | 432 | PRINTS | Pollen allergen Amb family signature | 129 | 154 | IPR018082 | - | |
Cec05g2688 | 432 | PRINTS | Pollen allergen Amb family signature | 331 | 350 | IPR018082 | - | |
Cec05g2688 | 432 | PRINTS | Pollen allergen Amb family signature | 229 | 250 | IPR018082 | - | |
Cec05g2688 | 432 | Pfam | Pectate lyase | 170 | 348 | IPR002022 | - | |
Cec05g2688 | 432 | Pfam | Pectate lyase, N terminus | 21 | 72 | IPR007524 | GO:0030570(InterPro) | |
Cec05g2688 | 432 | SUPERFAMILY | Pectin lyase-like | 83 | 423 | IPR011050 | - | |
Cec05g2688 | 432 | SMART | amb_all | 157 | 354 | IPR002022 | - | |
Cec05g2688 | 432 | Gene3D | - | 82 | 425 | IPR012334 | - | |
Cec05g2688 | 432 | PANTHER | PECTATE LYASE 18-RELATED | 19 | 429 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g2688 | Cec-Chr5:37456422 | Cec08g1811 | Cec-Chr8:29105402 | 2.40E-132 | dispersed | |
Cec08g0930 | Cec-Chr8:21099033 | Cec05g2688 | Cec-Chr5:37456422 | 6.70E-191 | transposed | |
Cec01g1797 | Cec-Chr1:32403441 | Cec05g2688 | Cec-Chr5:37456422 | 1.20E-63 | wgd | |
Cec01g1533 | Cec-Chr1:29916046 | Cec05g2688 | Cec-Chr5:37456422 | 2.80E-176 | wgd | |
Cec10g1498 | Cec-Chr10:29345860 | Cec05g2688 | Cec-Chr5:37456422 | 1.10E-190 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2688 | K01728 | - | csv:101206497 | 821.617 |