Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2688 ATGGCTATGCACTGGCTACTGCTAACATTGTCCTTGCTGGCAACTACCGCATTTGCTGACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGACGCCTTTGAGCCTAATCCTGAAACCGTCACCAACTCCTTCAATGCAGAAGTAGGCCAGTTATTGAGTGGAAGCAACGGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGCGATGCGACCCCAATTGGGCCAAGAACCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACTCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATTAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGACGGCATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCCATCATGGGATCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCACGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGCTTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCACTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 1299 49.5 MAMHWLLLTLSLLATTAFADIGNFDDYWKARAVDAEQAAADAFEPNPETVTNSFNAEVGQLLSGSNGTRRNLKKYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37456422 37457980 - CePI673135_05g026880.1 Cec05g2688 204491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2688 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cec05g2688 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cec05g2688 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Cec05g2688 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Cec05g2688 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cec05g2688 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cec05g2688 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cec05g2688 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cec05g2688 432 Pfam Pectate lyase 170 348 IPR002022 -
Cec05g2688 432 Pfam Pectate lyase, N terminus 21 72 IPR007524 GO:0030570(InterPro)
Cec05g2688 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
Cec05g2688 432 SMART amb_all 157 354 IPR002022 -
Cec05g2688 432 Gene3D - 82 425 IPR012334 -
Cec05g2688 432 PANTHER PECTATE LYASE 18-RELATED 19 429 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2688 Cec-Chr5:37456422 Cec08g1811 Cec-Chr8:29105402 2.40E-132 dispersed
Cec08g0930 Cec-Chr8:21099033 Cec05g2688 Cec-Chr5:37456422 6.70E-191 transposed
Cec01g1797 Cec-Chr1:32403441 Cec05g2688 Cec-Chr5:37456422 1.20E-63 wgd
Cec01g1533 Cec-Chr1:29916046 Cec05g2688 Cec-Chr5:37456422 2.80E-176 wgd
Cec10g1498 Cec-Chr10:29345860 Cec05g2688 Cec-Chr5:37456422 1.10E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2688 K01728 - csv:101206497 821.617