Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2712 ATGGATCGTCTTCACCTGCAATGGATTGCTGTTATGATCTCCATTCTGAGCCTTTCTGAAGCTTGCCATCCTGCGGATTGGAAGGGTCTAACCAGTTTCAAGTCTGGAATTTTCCTTGACACTTCTGGTAGGCTTGCAAAGTGGGTGGGACGAAACTGTTGTGATTGGGAAGGAGTTTCTTGTCACAACATTACAGGCAGAGTCAAAGAAATCAATTTGCCAGGCTTCATATCAACTGGTGATCTCCCCTTTCAGTCTGAGATGAGAGGCTTTCTTTCACCTTCAATAACACTGCTTAATGCCGTTGAGATTATTGATCTTGGAGGACTTCTTGGCCTCGGTGGAACAATCCCTTCGTTTATCGGTTTACGGCTTCGTAGCCTGCGAAAGCTCTATCTTTATGACAACAAGCTGAGAGGTCCACTTCCAGAAAGTGTAGGTAAGCTTCTGAAGCTTGAAGAACTTGCTGTGCATGATAATAAGCTATCTGGTTCACTCCCGGCATGTCTTGGCAGTCTCAAGACTCTCCATAGCCTTCTTCTATATGGAAATCGGTTTTCGGGTGCAATACCGGATTCATTTGCAGATCTTACTAACTTAGTTCAGATGGATTTACACAGCAACGCATTGGTTGGTCACATACCTGAGAGAATTGGTCAGTTGCAGATGTTGAAAGAGCTTGATCTTTCAAACAACTTCTTGAGCGGGAAAATTCCCCTTTCCTTAAACAATTTGACAAGTCTTTCAGTTTTGTATTTGGATAATAACAATCTGGAGGGACCGATGCCATTCGCATCAGTTTCTGGTCAGATCTCTTCTTCTTCTCTTGCTTTTCTTAGACTGAATGACAACCGTTTAAGTGGTGCTATCCCTTCTAGTTTTGGAGAGCTTGTCTTTCTCAAAAGAGCTTCACTTTCAAATAACAAACTTGAGGGAATAATTCCTCCTTCTTTAGGAAGGTTATCATCTTTGTCAGAGTTGTATCTCGACCGAAACTGCTTCTCCGGCCAAATACCAGAATCATTTGGACACCTCTCTCAGCTCATTCTCCTGAATCTCTCTCACAATTCCATCAAAGGGCCATTACCTGAGATGTCATCTCTTCGAAATATTCAAACCATTGATCTTTCTTACAACCTTCTAGACATGTCTTCAATTCCCCAGTGGCTATTAAGACTACCATCTCTTTCAAAAATCTATCTTGCAGGGTGTGGAATCCATGGCCAAATTCCAGAGTTCTTGCGAACAACTCCAAGTCCAATACAGGAACTAGATCTTTCCCTCAACCATCTTACTGGGAAAATTCCAGAATGGATTGGAAGCCTCACTCAGCTCTATTCACTAAAACTATCAGAAAACTCACTAGTCTCTGAGATTCCCAATTCCATTACAAATTTACTGGACTTGCGTGCGCTCGATCTTCATTCAAACAAGTTAACAGGCAACATACAGCAGATCTTCAAGATAGGACACAGATTTCCAGACGATTCTTTAACATACATTGATATTTCAGACAATAACTTCTCTGGGGACTTTGATCAAACAGATGTCGGAAAACAACCTGCGATTCAGTTTCTGAATTTGTCGCATAACAATCTGAAAGGAAGATTGCCCACTTCAATCGGTCAATTAAGATCAATACGAAGCCTGGATTTGAGCCGTAACAATTTGGGCTTCGACTTGCCAGAGGCCATAGTGAATGCAAACCAATTAGAGACGCTGAAGCTGCAAAGAAACCATTTTACAGGAAAAATACCAAAAGGGTTTTTGAAGTTGCGGAGGTTAAAGGAATTGGATCTGTCGAATAATTTGTTAGTGGGAGAAATTCCAGCGGGAAAGCCGCTGAGCGATTTTCCTCGAAGCGCTTACATGGGTAACAAAGGTTTGTGTGGAAAGCCTTTAAGCCCATGTAAGCTTTGA 1920 42.03 MDRLHLQWIAVMISILSLSEACHPADWKGLTSFKSGIFLDTSGRLAKWVGRNCCDWEGVSCHNITGRVKEINLPGFISTGDLPFQSEMRGFLSPSITLLNAVEIIDLGGLLGLGGTIPSFIGLRLRSLRKLYLYDNKLRGPLPESVGKLLKLEELAVHDNKLSGSLPACLGSLKTLHSLLLYGNRFSGAIPDSFADLTNLVQMDLHSNALVGHIPERIGQLQMLKELDLSNNFLSGKIPLSLNNLTSLSVLYLDNNNLEGPMPFASVSGQISSSSLAFLRLNDNRLSGAIPSSFGELVFLKRASLSNNKLEGIIPPSLGRLSSLSELYLDRNCFSGQIPESFGHLSQLILLNLSHNSIKGPLPEMSSLRNIQTIDLSYNLLDMSSIPQWLLRLPSLSKIYLAGCGIHGQIPEFLRTTPSPIQELDLSLNHLTGKIPEWIGSLTQLYSLKLSENSLVSEIPNSITNLLDLRALDLHSNKLTGNIQQIFKIGHRFPDDSLTYIDISDNNFSGDFDQTDVGKQPAIQFLNLSHNNLKGRLPTSIGQLRSIRSLDLSRNNLGFDLPEAIVNANQLETLKLQRNHFTGKIPKGFLKLRRLKELDLSNNLLVGEIPAGKPLSDFPRSAYMGNKGLCGKPLSPCKL 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37635637 37637556 + CePI673135_05g027120.1 Cec05g2712 204515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2712 639 Pfam Leucine Rich Repeat 570 592 IPR001611 GO:0005515(InterPro)
Cec05g2712 639 Pfam Leucine Rich Repeat 224 245 IPR001611 GO:0005515(InterPro)
Cec05g2712 639 Pfam Leucine Rich Repeat 594 611 IPR001611 GO:0005515(InterPro)
Cec05g2712 639 Pfam Leucine Rich Repeat 176 197 IPR001611 GO:0005515(InterPro)
Cec05g2712 639 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515(InterPro)
Cec05g2712 639 Pfam Leucine rich repeat 497 557 IPR001611 GO:0005515(InterPro)
Cec05g2712 639 Pfam Leucine rich repeat 275 332 IPR001611 GO:0005515(InterPro)
Cec05g2712 639 Pfam Leucine rich repeat 421 479 IPR001611 GO:0005515(InterPro)
Cec05g2712 639 Gene3D Ribonuclease Inhibitor 368 639 IPR032675 -
Cec05g2712 639 Gene3D Ribonuclease Inhibitor 20 87 IPR032675 -
Cec05g2712 639 PRINTS Leucine-rich repeat signature 224 237 - -
Cec05g2712 639 PRINTS Leucine-rich repeat signature 592 605 - -
Cec05g2712 639 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Cec05g2712 639 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 115 373 IPR051564 -
Cec05g2712 639 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 363 639 - -
Cec05g2712 639 SUPERFAMILY L domain-like 51 381 - -
Cec05g2712 639 Gene3D Ribonuclease Inhibitor 88 367 IPR032675 -
Cec05g2712 639 FunFam Leucine-rich repeat receptor protein kinase EMS1 269 362 - -
Cec05g2712 639 SMART LRR_typ_2 442 466 IPR003591 -
Cec05g2712 639 SMART LRR_typ_2 368 393 IPR003591 -
Cec05g2712 639 SMART LRR_typ_2 544 568 IPR003591 -
Cec05g2712 639 SMART LRR_typ_2 321 344 IPR003591 -
Cec05g2712 639 SMART LRR_typ_2 125 148 IPR003591 -
Cec05g2712 639 SMART LRR_typ_2 592 614 IPR003591 -
Cec05g2712 639 SMART LRR_typ_2 149 173 IPR003591 -
Cec05g2712 639 SMART LRR_typ_2 197 221 IPR003591 -
Cec05g2712 639 SMART LRR_typ_2 245 274 IPR003591 -
Cec05g2712 639 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 81 268 - -
Cec05g2712 639 SUPERFAMILY L domain-like 387 637 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2712 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g818 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02493 Cam05g2678 Cec05g2712 Cco05g2747 Clacu05g2680 Cmu05g2535 Cre05g2650 . . . . Lsi04g00493 Csa05g02392 Chy10g00954 Cme10g00472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014248 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 23