Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2753 ATGTTGTATCCGGCGATTCAATCATGCGAATGCACAGCTCCGGCGACTCTACTGAACTCTCTGATCAATCTCAGTCAAACCATTTGCAGTTACAGATGCAAATTCTTCGGCAGCAACAAGCGAAACGCCATCAAATCGATTCGCCAAATCGGAATTCTTCTCACATTCTTCGAAGAACTTCAGGATCAGAAATCAAAAGAGTTTTCAGATTCAACCGTATTACTTCTGTCGGAGCTACATTTAATCTTTCAAAAGATTTTGTATCTGTTGGAAGATTGTGCCCTAGAAGGCGCTCGTTTGTTAATGCTCATGAAATCAGAAGTCATCGCGAATCGGTTTCGGGTTTTGATCCGATCCATTGCTCTGGCTCTGGAGATTTTGCCGTTGGATTCGATGGATGTTTCAATCGACGTCGTGGAATATGTAGAATTGGTGACGAAACAAGCACGAAGGGCGAATTTCGAAATCGATCGTGAAGATGAAGAGATTCTCAACGAGGTAAAATCAATTCTGTCTCTATTTGATTCTGGTGTTGTTCCGGAAAATAGTCAAATCAAACGCGTTCTTGATTATATTGGGGTTAAATCGTGGAGTTTGTGCAATAAGGAAGTTAAATTTTTGGATTCAGAAATTGAATTTGAATGGTCGAATCAGGATAAAACAGGGCTTCCCTTCTTAAGCAACTTAATGGGTTTGATGAACTACTGTCGATGTATGCTATTCGGTGCCGTCGATAGCGAAGTGGTTCGACATGTCGATCAATGTAGCAACAAAATGATCGATTGTTTAAACCCAGATGATTTTCGATGCCCAATCTCTTTGGATTTCATGTTTGATCCTGTGACACTCGCAACAGGGCAAACTTATGATCGTTCTTCAATCCAAAAGTGGTTTCGGGCAGCAAATCTCACCTGCCCGAATACAGGGGAGAGATTGAAGAACAAAGAAGTAGTCCCTAATTTAGCTCTCCGTCGGATAATTCGGCAATACTGTTCTAAAAATTCAATCCCTTTTCCAGAATCAAGCAAACAAAAACCCAACTTAACAAGGACGATTGCTTCTGGTTCTCCCACAGTGGAGAAGATTATTGGGTTTCTGGTGAATTTTTTAGCTAAGTTTCTTGAATCAGGAACGCTGGAAGAGAAGAACAGAGCCGCTTTTGAGATCAAATTTCTATCTAAAGCTAGTCTCTTTTATCGTTATTGTTTGGTGGAAGTTGGTCTAATTCCAAATTTACTCAAGCTTTTGAGATCTAGAGATACTTTAACGCAGAAGAACGCCATTGCAGCTGTGTTGAACCTCTCAAAGCATTCAAAAAGCAAGAAAGTAATAGCGGAAAACAGAGGATTAGAAGCAATTGTAGATGTTTTAGTGACGGGTTACAGAGTAGAAGCCCGTCAATTTGCTGCCGGTGCTCTGTTTTACATGGCTTCCATTGAAGAATACAGGAAACTCATCGGCGAAATCCCGAATGCACTTTCGGGTTTGTTGAATTTACTCAAAGATGAAGCAGATCGTAGTAAAAAGAATGCAATGGTTGCAATTTATGGGCTTCTTATGCATTCTGGAAACCACAGGAAAGTGCTTTCCGCTGGAGCAGTTCCATTGTTGGTTGATTTGATTGAAACATCGGATAGTGAAATTCTGATTTCAGATTCAATGGAGATTCTTGCCACTCTAGCAGGAAAGCCAGAAGGAGCTGCTTCGATTTTGCGAAGTGGGGCTTTGAATTCAATTGTGGGGTTTCTGAATTCATGTAGCTCAATTGCTGGACGAGAGTACTCTGTTTCTTTATTGGTAGCTCTTTGCGTTAATGGCGGATCTGAGGTAATTGGTGTGATTGCAAAGAATCAAACTGTGATTTCGTCGGTGTATAGTGTTGTAAGTGAAGGCACAAGTCGAGGGAAGAAGAAGGCAGGTTCTTTGATTAGAGTTCTTCAGGAATTCACTGAATTAGGGTCATCAAGCTCGGAGGCAAATCATCTTAGGCAAGATCGAATTGTTCAAGCCTGGTAA 2016 41.07 MLYPAIQSCECTAPATLLNSLINLSQTICSYRCKFFGSNKRNAIKSIRQIGILLTFFEELQDQKSKEFSDSTVLLLSELHLIFQKILYLLEDCALEGARLLMLMKSEVIANRFRVLIRSIALALEILPLDSMDVSIDVVEYVELVTKQARRANFEIDREDEEILNEVKSILSLFDSGVVPENSQIKRVLDYIGVKSWSLCNKEVKFLDSEIEFEWSNQDKTGLPFLSNLMGLMNYCRCMLFGAVDSEVVRHVDQCSNKMIDCLNPDDFRCPISLDFMFDPVTLATGQTYDRSSIQKWFRAANLTCPNTGERLKNKEVVPNLALRRIIRQYCSKNSIPFPESSKQKPNLTRTIASGSPTVEKIIGFLVNFLAKFLESGTLEEKNRAAFEIKFLSKASLFYRYCLVEVGLIPNLLKLLRSRDTLTQKNAIAAVLNLSKHSKSKKVIAENRGLEAIVDVLVTGYRVEARQFAAGALFYMASIEEYRKLIGEIPNALSGLLNLLKDEADRSKKNAMVAIYGLLMHSGNHRKVLSAGAVPLLVDLIETSDSEILISDSMEILATLAGKPEGAASILRSGALNSIVGFLNSCSSIAGREYSVSLLVALCVNGGSEVIGVIAKNQTVISSVYSVVSEGTSRGKKKAGSLIRVLQEFTELGSSSSEANHLRQDRIVQAW 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38021601 38023616 + CePI673135_05g027530.1 Cec05g2753 204556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2753 671 SUPERFAMILY RING/U-box 265 339 - -
Cec05g2753 671 Gene3D - 360 659 IPR011989 -
Cec05g2753 671 CDD RING-Ubox_PUB 265 317 IPR045210 -
Cec05g2753 671 Pfam Armadillo/beta-catenin-like repeat 402 435 IPR000225 GO:0005515(InterPro)
Cec05g2753 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515(InterPro)
Cec05g2753 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 532 575 IPR000225 GO:0005515(InterPro)
Cec05g2753 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Cec05g2753 671 Pfam U-box domain 265 335 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g2753 671 ProSiteProfiles U-box domain profile. 263 337 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g2753 671 SMART arm_5 395 436 IPR000225 GO:0005515(InterPro)
Cec05g2753 671 SMART arm_5 521 562 IPR000225 GO:0005515(InterPro)
Cec05g2753 671 SMART arm_5 437 478 IPR000225 GO:0005515(InterPro)
Cec05g2753 671 PANTHER U BOX DOMAIN-CONTAINING 38 648 - -
Cec05g2753 671 FunFam RING-type E3 ubiquitin transferase 264 336 - -
Cec05g2753 671 SUPERFAMILY ARM repeat 361 646 IPR016024 -
Cec05g2753 671 SMART Ubox_2 267 330 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2753 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2753 Cec-Chr5:38021601 Cec11g0628 Cec-Chr11:6917208 1.60E-79 dispersed
Cec03g1439 Cec-Chr3:32076778 Cec05g2753 Cec-Chr5:38021601 6.10E-10 transposed
Cec04g1948 Cec-Chr4:37788375 Cec05g2753 Cec-Chr5:38021601 3.30E-34 transposed
Cec01g1479 Cec-Chr1:29459134 Cec05g2753 Cec-Chr5:38021601 1.50E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g734 . . . . . . . Bma15g00190 . . . . . . Sed06g1631 . Cpe01g01524 Bhi07g01714 Tan04g1218 Cmetu10g0188 Lac13g0211 Hepe10g1648 . . Cla05g02532 Cam05g2722 Cec05g2753 Cco05g2794 Clacu05g2724 Cmu05g2578 Cre05g2692 Cone2ag0897 . . . Lsi04g00538 Csa05g02344 Chy10g00911 Cme10g00515 Blo06g00872 . . . . . . . . . . Cma04g01724 . Car04g01755 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002583 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 3 2 1 59