Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2756 ATGACAAGATCAAGTATCATTCTCAGAAAAGGGGTTCTGAAATCGCTTCTCCGGCTCTTCCCTTATTCTCTAGTCTCTAGGGCACAACGTACTCCAATTACTTCGTCGGAAAATCTGAAAGATAAGCCTGGAAGCTTTCAACTTCCTTGCGATCTTCTTTCGACTTCAATGGCGGATTCTTCCTCTTCCCCTGCGACTCTCGATTCAAATCCTCAAGCTGCCGAGCCCGAAAACCCCAATTCACAGGCCAACAAACCCGAATCTGCCGCTTCTTCTTTTCCTCCACCGCAATCGCTACCACCAACATCTCTTTCTGTCGGAATAAACCCTACCTTGCATCCACCCTTAGTGTCAACGCCGCAACCACCTCCTTCTCTATCGTATGCCCCCTCACCCTTATCCGGTGCGGTGGCCGTTCCTCCGACGGCACCGTCTTTCCGGCCTGTGCCTCTCTCAGCTCATCACTTCTCGCCCATGCCCGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCGGGGGTTAGCTCGGTTGCGGCGCCTGCTCCTGGTATGGCAAGTGGCGGCACGGGAGCAGTTCCACTTCCAGCGCCACAACCGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCGAATCCGGCGATGAGGCCGTACGCCACCATGCCAAATGGTTTCGCAGCTGTGCCAACTGCTACTCCTCAAGGGGCATTTCCTCTCCCTGCGTTTTGTCTCTTGATTGAATACGGTGAGAAAGGTTGGAAGGCTTCATATTGCTTAGAGAACTCCCAACTACAACTCCTTTTTTGGATTTTACTGGTAGTTATATTGGATACTGTCCCTGGATATTTGAATTGCCAGAAGCAGACCATGTTAGCACCTGAGTGTTCGTTCGCCTTGTTTCTAAGGTTATCTATGCATTCAGCTGCTGATAGTTTCCATTCCTATGCTGCCATCATTTATATGCTTTGGATTTTGATATTTTTCTTTATTTGTGCAGGAATTCCACGTTTCCCTTCTCCATATCCTGCTATGATTAGGACGCCTTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTTCCAGCAATGCCACGACCTCCTATTCCTGGGATTCCTGGTGTGCGCCCAATCATCCCTCCTGTGGTTAGGCCTGCTGTGCTCCCAAGTGTTACACCAGCCGAACAACCACAAACTACTATTTATATTGGCCGAATTGCACAATCAGTGGATAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGGGCCCAAAATCCATCAGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTTCGGGCACTACGGTTACTGACAAAGTTAAACATTGATGGACAAGAACTAGTGCTAAAAGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAATTCAAAGAAACTGAAAGAAACACAAGTTTCAGAGACTAAGGAAGAAGAAGCAGCCACAACGAATGTGGCTAGAAATGAAACTTCAAAGCCCTCTGCAGAGGATTCAAAGGAAGATAACGATTCAGGGGAAAAGGATCTTGACATTGCCCGTTCTGCAGTTTTAAGTGATGAAGATAGAGATGCAGACCGCGTGGCGTCGGAAAAACTTACAAATGCATTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTTATGACAACTGCTGATGTCTCTGGTAATTCAAGTGCGGAGCCATCTGCTAAATTGAAAGATGGTGAAGCTGACGCTGATGTTTTGAAACCTGATGCAGCTGACGATAGAAATGATGATGACACAACTAGTGACCATAAACAAACTAGTGAGCAAGACAAGCCTGAAACAAGCTCACCAGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGATAGGGAGAGGGATCTGAAAAGGGATAAGGAGCGGGCAATTGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGCTAGGAAGGAGAGGGAACAAAGAAGAAAGTTTGAGGAGGCCGAGCGACAGTATGAAGAATGTCTCAAAGAGTGGGAATATCGAGAAAGAGAGAGAGAAAAGCAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGAAAGAAAGAGATATTGTATGATGAAGATGACGAGGATGATGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTCGAGAAAAGGAAGATGATTCGGTCGATAGACAGAAAGAGGAAGAAGAAATTGCTGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCTGCAGAAACAGAAAGACCCGCTGAAACTTGTATCTGGTCAGATGTCAAATGTCAACGAGAAAACTATTCTTGCTGAAGAATCTGCTAATGAGATTAAAGTTATGGCTTCTGAACGTGAATCTGAGCTTGACTCTAGCTGTGATAACCATATAGGGGATGGGATCTTGCAAAATGGTAGTGGTGATGAACTAAGTACGATACCATCAGAGACTCGACATAGTGGAGGGTTGCCTGCAAAAAGGTTAGGATTTGGTTTAGTGGGATCTGGAAAACGGACTGCTGTACCTTCAGTTTTTCATGAGGAGGAGGATGATGAAGCACAGAAAGAGAAAAAGATGAGGCCGCTGGTTCCAATTGATTACTCAGCTGAGGAACTACAGGCTGTTCAACCTGCCAGTACTGCGGCTTTGCCACCAAATTTAGCTGCAGCAGCTGAGTTTGCAAAACGTATATCTAATGTTAATTCCAAAGAAGAGAAGTCTGATGGTGAAAGGGAGCGAGGAAGGCGTTCCAGTGAAAAGTCAGGTCATAGAGACCGAAATGATGAGGATACCTATCGCAGCAAAGATGAGAACAAGACAATAGACAGAGATAGGGAGCGAGACCATGTTTTGGATAAAGTAAAAACACCAGATAACAAAAAACTTTTGGATGCGAAACAGTTGATTGATATGATTCCAAAGACAAAAGAGGAATTATTCTCATATGATATAAATTGGGCTATTTATGAAAAGCATGCACTACATGAGAGAATGAGACCGTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAGGAAACCACTCTTGTGGATTACATAGTTTCAAGTACTCAGGAACACGTAAAGGCATCTCAGATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTCATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTCAGAACAAAAGCATGA 3357 45.7 MTRSSIILRKGVLKSLLRLFPYSLVSRAQRTPITSSENLKDKPGSFQLPCDLLSTSMADSSSSPATLDSNPQAAEPENPNSQANKPESAASSFPPPQSLPPTSLSVGINPTLHPPLVSTPQPPPSLSYAPSPLSGAVAVPPTAPSFRPVPLSAHHFSPMPGTGMLNPSYPNPGVQPPGVSSVAAPAPGMASGGTGAVPLPAPQPMMAYQVPPGQVPNPAMRPYATMPNGFAAVPTATPQGAFPLPAFCLLIEYGEKGWKASYCLENSQLQLLFWILLVVILDTVPGYLNCQKQTMLAPECSFALFLRLSMHSAADSFHSYAAIIYMLWILIFFFICAGIPRFPSPYPAMIRTPFPPRPPGAMGMVPAMPRPPIPGIPGVRPIIPPVVRPAVLPSVTPAEQPQTTIYIGRIAQSVDNDFMLSLLQLCGPVKSWKRAQNPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEEEAATTNVARNETSKPSAEDSKEDNDSGEKDLDIARSAVLSDEDRDADRVASEKLTNALEERLKSRPLPPPPLMTTADVSGNSSAEPSAKLKDGEADADVLKPDAADDRNDDDTTSDHKQTSEQDKPETSSPDRSRRYDRRSRERDRERDLKRDKERAIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQKEEEEIAEAKRKAEEEQLQKQKDPLKLVSGQMSNVNEKTILAEESANEIKVMASERESELDSSCDNHIGDGILQNGSGDELSTIPSETRHSGGLPAKRLGFGLVGSGKRTAVPSVFHEEEDDEAQKEKKMRPLVPIDYSAEELQAVQPASTAALPPNLAAAAEFAKRISNVNSKEEKSDGERERGRRSSEKSGHRDRNDEDTYRSKDENKTIDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38030258 38036089 - CePI673135_05g027560.1 Cec05g2756 204559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2756 1118 MobiDBLite consensus disorder prediction 886 906 - -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 600 696 - -
Cec05g2756 1118 Gene3D - 396 516 IPR012677 -
Cec05g2756 1118 Coils Coil 765 792 - -
Cec05g2756 1118 CDD RRM_RBM25 403 486 IPR034268 -
Cec05g2756 1118 FunFam RNA Binding Motif protein homolog 997 1113 - -
Cec05g2756 1118 Coils Coil 655 704 - -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 49 92 - -
Cec05g2756 1118 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 403 488 IPR000504 GO:0003723(InterPro)
Cec05g2756 1118 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 57 1118 IPR053294 -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 35 134 - -
Cec05g2756 1118 SUPERFAMILY RNA-binding domain, RBD 358 476 IPR035979 GO:0003676(InterPro)
Cec05g2756 1118 SMART rrm1_1 404 477 IPR000504 GO:0003723(InterPro)
Cec05g2756 1118 Coils Coil 708 735 - -
Cec05g2756 1118 SMART pwi_2 1034 1107 IPR002483 -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 825 906 - -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 496 696 - -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 708 803 - -
Cec05g2756 1118 SUPERFAMILY PWI domain 1039 1106 IPR036483 -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 496 516 - -
Cec05g2756 1118 Pfam PWI domain 1041 1104 IPR002483 -
Cec05g2756 1118 Pfam RNA recognition motif 405 474 IPR000504 GO:0003723(InterPro)
Cec05g2756 1118 Gene3D PWI domain 997 1113 - -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 943 997 - -
Cec05g2756 1118 Coils Coil 491 511 - -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 708 795 - -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 115 129 - -
Cec05g2756 1118 MobiDBLite consensus disorder prediction 525 571 - -
Cec05g2756 1118 ProSiteProfiles PWI domain profile. 1021 1118 IPR002483 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2756 K12822 - - csv:101214372 1106.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47