Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2773 ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCAAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCATGTAGAGAAATGAATTCAGGGATGTTCTTTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGTAATCAGATTGAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCATTTTTGACATAA 570 42.46 MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGMFFDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTENCNQIEVHKDGKCFPRHSFLT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38145196 38146587 - CePI673135_05g027730.1 Cec05g2773 204576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2773 189 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Cec05g2773 189 CDD HMG-box_SF 119 165 - -
Cec05g2773 189 Gene3D High mobility group box domain 110 175 IPR036910 -
Cec05g2773 189 SUPERFAMILY HMG-box 104 160 IPR036910 -
Cec05g2773 189 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2773 Cec-Chr5:38145196 Cec06g1293 Cec-Chr6:26175656 1.40E-31 dispersed
Cec05g2773 Cec-Chr5:38145196 Cec08g1850 Cec-Chr8:29346030 7.80E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29689 PF04690 YABBY 2.00E-57 CL0114 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2773 K25796 - csv:101211641 329.331