Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2778 ATGGAAGAAATGTACGGTTTACAATCCACGGCGGAGTATTCAGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTGCCACCGGATTATCAGAGCCTTCTTGTGAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCAGCGGCGGCATCGGCGATTTCGGAAGCGGAAGCAGCATCGATCACGCCGGAAATTCGACGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACATACTGCGATATGTTGGTGAAGTACAAATTAGATCTCAAAAGGCCTTTCGACGAAGCAACTACGTTCTTGAATAAGATCGAACTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCCAAAGAAGCCAGGCAAACACTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCATTGGCAGAGAGAACGGGACTAGATCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGGAAACGCCACTGGAAGCCATCAGAGAATATACAGTTTGAAGGAATGGATGGGCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA 975 46.46 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEIRREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKLDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENIQFEGMDGLSSGRFFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38185860 38192572 + CePI673135_05g027780.1 Cec05g2778 204581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2778 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Cec05g2778 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g2778 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec05g2778 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 312 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec05g2778 324 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Cec05g2778 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g2778 324 Gene3D - 239 311 - -
Cec05g2778 324 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Cec05g2778 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g2778 324 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Cec05g2778 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g2778 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Cec05g2778 324 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
Cec05g2778 324 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
Cec05g2778 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1945 Cec-Chr5:31502954 Cec05g2778 Cec-Chr5:38185860 1.20E-71 dispersed
Cec05g2778 Cec-Chr5:38185860 Cec08g1742 Cec-Chr8:28552386 2.70E-64 dispersed
Cec02g1575 Cec-Chr2:33345491 Cec05g2778 Cec-Chr5:38185860 3.00E-71 transposed
Cec08g1842 Cec-Chr8:29301026 Cec05g2778 Cec-Chr5:38185860 3.90E-56 transposed
Cec05g2778 Cec-Chr5:38185860 Cec06g1905 Cec-Chr6:32410348 5.20E-63 wgd
Cec05g2778 Cec-Chr5:38185860 Cec08g1841 Cec-Chr8:29286810 3.80E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29690 PF03791 KNOX2 5.20E-24 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2778 - - - 0.0