Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec05g2827 | ATGCATATGATGCATTCAATGGGAAAGAGATGGGCCCTGAAATGGGCGGTTTGTGGAGACATTGGGCCCAAAGGCACTTCCTTAAGCTCCCCCTCTCCGCCATCGCCAGGTTCCTCCATCATTCTGCAACTCAGTGTTCACTTCTCTTTCACTGAACAACTTGGCGCTAACCGCCTCGTCTTTCGAGCCAGTATCACCAAGTGCGTCAAGGTTGGTATAATTGATGAAGCCATACGGATATTCGATGAAATGACTCAATCCAATTGCACTGTAACTAGCAGAGACTACAATCGCTTCATTGGTGTTTTGATTAGCCGCTCACGTTTCGATTTGGCCGAAAGCTATTACTCGAGAATGATACCACAAGGTTTTTCTCTTACTCCATTTACTTACTCCAGGTTCATTTCTGCTTTATGTGAAATTAAGAATTTCGGGCTCATAGGAAGGCTCTTAGAAGATATGCATAAACTTGGCTATCTTCCTGACATTTGGGCATTTAATATATATTTGAATCTCTTATTCCGCGAGAATTTTTTAGAATTAGCTCTAGAATTTTTTGACGAAATGGTTGCGAAAGGAAGGGAACCTGATGTTGTAACATACACTATAATAGTTGATAGATTGTGCAAAGCCAAACAATATGACAAAGCTGTCGAGTTTTGGCGTTGTATGGTTAATAAGGGGCTTACTCCGGACATGAAAGCCTGTACAGCCCTCGTTGTTGGGCTCTGCGATGGTGGGAAGGTTGATTTAGCCTACGAGCTTACGGTTGGTGAAATGAAGGGTCAGATGAAGTTCAACAACTTGATTTTTAATTCTCTGATGAGCGGGTTTTGTAAGGTTGGCCGGATCTCCAAGGCACTGGCCATCAAATCATTTATGAGTAAAAGTGGTTGCGAGCCGGATTTGGTTACTTATAATATTTTGCTGAACTTTTTTTGCGATGGGCTGATGTTAGAGGTGGCCGGAAAGTCTATGAAAAAGATGGAGAGGATAGGAATGGAGCCTGATGTGTATAGTTACAATCAACTTCTTAAAGGTCTTTGCAAAGCTAATAGGCTGGATAAGGCATATAAATTGATGAATAAAATGTGGGTAAAAGGTTTGTGTGATACCGTTTCATACAATACCGTGATAGGTGCATTATGCAAAGCATTGGCAACTAGAAAGGCATACAAGCTGTTTGAGGAAATGGGCCAGAAAGGTGTCGCTCCAGACGTGGGAACATTTGCCACTCTTATAAAAGCATTTCTTAAAGAAGGCAGCTCCCATATTGCGAAGAGACTTCTTCAAAAAATGACAGAGACAGTTCTGTTACCTGATCACATATTTTATACAACGGTCATAGATTACCTTTGCAAGACAGGGAACATTGAGATGGCGCAAGGCGTCTTCTGTGATATGATAGAGATAGGAATTGCCCCTGATGTGGTTTCATATAATGCGCTTATAAATGGGCTTTGCAAGGCCTTCAAAGTTAGTGAGGCCATGTTACTGTATGAGGAAATGCAAATTAGAGGATGCTATCCTGACGAGGTAACTTTCAAACTGATAATTGGAGGACTTTTACGAGAAAAGAAACTTTCTTTAGCTTGTCAGGGATGCTGGTTAACTATGGAACTAGGATCAAATGGGCCTCATAAACATATAAATCATATTTTGATGCGACTGTTCATCTGTGGTACCATTGGGAGATCCTTTGGCAATTGCAAGATTCGATCTTCCTTTCTTGGAGACTTGGACCAGCTCTTTGACTTCTGGTGCGCCATTCCATGCTTGCATGCATATACATACGTCTAA | 1800 | 41.61 | MHMMHSMGKRWALKWAVCGDIGPKGTSLSSPSPPSPGSSIILQLSVHFSFTEQLGANRLVFRASITKCVKVGIIDEAIRIFDEMTQSNCTVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDMHKLGYLPDIWAFNIYLNLLFRENFLELALEFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLTPDMKACTALVVGLCDGGKVDLAYELTVGEMKGQMKFNNLIFNSLMSGFCKVGRISKALAIKSFMSKSGCEPDLVTYNILLNFFCDGLMLEVAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNKMWVKGLCDTVSYNTVIGALCKALATRKAYKLFEEMGQKGVAPDVGTFATLIKAFLKEGSSHIAKRLLQKMTETVLLPDHIFYTTVIDYLCKTGNIEMAQGVFCDMIEIGIAPDVVSYNALINGLCKAFKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLREKKLSLACQGCWLTMELGSNGPHKHINHILMRLFICGTIGRSFGNCKIRSSFLGDLDQLFDFWCAIPCLHAYTYV | 599 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 38533681 | 38537592 | + | CePI673135_05g028270.1 | Cec05g2827 | 204630 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | IPR002885 | - | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 162 | 196 | IPR002885 | - | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 406 | 440 | IPR002885 | - | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 337 | 367 | IPR002885 | - | |
| Cec05g2827 | 599 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 263 | 433 | - | - | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 441 | 475 | IPR002885 | - | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 302 | 336 | IPR002885 | - | |
| Cec05g2827 | 599 | Pfam | PPR repeat | 333 | 364 | IPR002885 | - | |
| Cec05g2827 | 599 | Gene3D | Tetratricopeptide repeat domain | 47 | 153 | IPR011990 | GO:0005515(InterPro) | |
| Cec05g2827 | 599 | NCBIfam | pentatricopeptide repeat | 165 | 198 | IPR002885 | - | |
| Cec05g2827 | 599 | NCBIfam | pentatricopeptide repeat | 199 | 232 | IPR002885 | - | |
| Cec05g2827 | 599 | NCBIfam | pentatricopeptide repeat | 478 | 512 | IPR002885 | - | |
| Cec05g2827 | 599 | NCBIfam | pentatricopeptide repeat | 373 | 407 | IPR002885 | - | |
| Cec05g2827 | 599 | NCBIfam | pentatricopeptide repeat | 339 | 369 | IPR002885 | - | |
| Cec05g2827 | 599 | NCBIfam | pentatricopeptide repeat | 445 | 477 | IPR002885 | - | |
| Cec05g2827 | 599 | NCBIfam | pentatricopeptide repeat | 270 | 302 | IPR002885 | - | |
| Cec05g2827 | 599 | Gene3D | Tetratricopeptide repeat domain | 282 | 368 | IPR011990 | GO:0005515(InterPro) | |
| Cec05g2827 | 599 | Gene3D | Tetratricopeptide repeat domain | 154 | 281 | IPR011990 | GO:0005515(InterPro) | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 57 | 91 | IPR002885 | - | |
| Cec05g2827 | 599 | Pfam | PPR repeat | 65 | 89 | IPR002885 | - | |
| Cec05g2827 | 599 | Pfam | PPR repeat | 445 | 473 | IPR002885 | - | |
| Cec05g2827 | 599 | Gene3D | Tetratricopeptide repeat domain | 369 | 437 | IPR011990 | GO:0005515(InterPro) | |
| Cec05g2827 | 599 | Gene3D | Tetratricopeptide repeat domain | 467 | 536 | IPR011990 | GO:0005515(InterPro) | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 476 | 510 | IPR002885 | - | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 127 | 161 | IPR002885 | - | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 371 | 405 | IPR002885 | - | |
| Cec05g2827 | 599 | Pfam | PPR repeat family | 161 | 210 | IPR002885 | - | |
| Cec05g2827 | 599 | Pfam | PPR repeat family | 270 | 315 | IPR002885 | - | |
| Cec05g2827 | 599 | Pfam | PPR repeat family | 475 | 523 | IPR002885 | - | |
| Cec05g2827 | 599 | Pfam | PPR repeat family | 371 | 419 | IPR002885 | - | |
| Cec05g2827 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec05g2827 | - | - | - | - | 0.0 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g620 | . | . | . | . | . | . | Bma14g01828 | . | . | Cmo18g00756 | . | Cma18g00751 | . | Car18g00685 | . | Cpe09g00548 | . | Bhi07g01807 | . | . | . | . | . | . | Cla05g02598 | Cam05g2789 | Cec05g2827 | Cco05g2859 | Clacu05g2791 | Cmu05g2639 | Cre05g2755 | Cone13ag1092 | . | . | . | Lsi04g00608 | Csa05g02277 | Chy10g00843 | Cme10g00587 | . | . | Bda07g01644 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0006460 | 1 | 3 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 30 |